Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05732 and H281DRAFT_05733 are separated by 129 nucleotides H281DRAFT_05733 and H281DRAFT_05734 are separated by 466 nucleotides
H281DRAFT_05732: H281DRAFT_05732 - hypothetical protein, at 5,045 to 5,866
_05732
H281DRAFT_05733: H281DRAFT_05733 - PXPV repeat-containing protein, at 5,996 to 6,307
_05733
H281DRAFT_05734: H281DRAFT_05734 - aquaporin Z, at 6,774 to 7,514
_05734
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5.015 kb on - strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.044 kb on + strand at 5.045 kb on - strand at 5.045 kb on - strand at 5.045 kb on - strand at 5.045 kb on - strand at 5.045 kb on - strand at 5.048 kb on + strand at 5.049 kb on - strand at 5.049 kb on - strand at 5.049 kb on - strand at 5.049 kb on - strand at 5.049 kb on - strand at 5.049 kb on - strand at 5.049 kb on - strand at 5.049 kb on - strand at 5.049 kb on - strand at 5.050 kb on + strand at 5.051 kb on - strand at 5.198 kb on - strand, within H281DRAFT_05732 at 5.233 kb on + strand, within H281DRAFT_05732 at 5.269 kb on + strand, within H281DRAFT_05732 at 5.269 kb on + strand, within H281DRAFT_05732 at 5.270 kb on - strand, within H281DRAFT_05732 at 5.270 kb on - strand at 5.270 kb on - strand, within H281DRAFT_05732 at 5.441 kb on + strand, within H281DRAFT_05732 at 5.441 kb on + strand, within H281DRAFT_05732 at 5.495 kb on + strand, within H281DRAFT_05732 at 5.495 kb on + strand, within H281DRAFT_05732 at 5.495 kb on + strand, within H281DRAFT_05732 at 5.495 kb on + strand, within H281DRAFT_05732 at 5.495 kb on + strand, within H281DRAFT_05732 at 5.496 kb on - strand, within H281DRAFT_05732 at 5.496 kb on - strand, within H281DRAFT_05732 at 5.496 kb on - strand, within H281DRAFT_05732 at 5.496 kb on - strand, within H281DRAFT_05732 at 5.496 kb on - strand, within H281DRAFT_05732 at 5.564 kb on + strand, within H281DRAFT_05732 at 5.564 kb on + strand, within H281DRAFT_05732 at 5.565 kb on - strand, within H281DRAFT_05732 at 5.565 kb on - strand, within H281DRAFT_05732 at 5.573 kb on + strand, within H281DRAFT_05732 at 5.573 kb on + strand, within H281DRAFT_05732 at 5.574 kb on - strand, within H281DRAFT_05732 at 5.928 kb on + strand at 5.928 kb on + strand at 5.929 kb on - strand at 5.929 kb on - strand at 5.964 kb on + strand at 5.964 kb on + strand at 5.965 kb on - strand at 5.965 kb on - strand at 5.968 kb on + strand at 5.969 kb on - strand at 5.969 kb on - strand at 5.984 kb on + strand at 5.985 kb on - strand at 5.998 kb on - strand at 6.105 kb on + strand, within H281DRAFT_05733 at 6.105 kb on + strand, within H281DRAFT_05733 at 6.105 kb on + strand, within H281DRAFT_05733 at 6.106 kb on - strand, within H281DRAFT_05733 at 6.106 kb on - strand at 6.140 kb on - strand, within H281DRAFT_05733 at 6.147 kb on + strand, within H281DRAFT_05733 at 6.193 kb on - strand, within H281DRAFT_05733 at 6.193 kb on - strand, within H281DRAFT_05733 at 6.245 kb on + strand, within H281DRAFT_05733 at 6.368 kb on + strand at 6.368 kb on + strand at 6.368 kb on + strand at 6.369 kb on - strand at 6.518 kb on + strand at 6.518 kb on + strand at 6.518 kb on + strand at 6.518 kb on + strand at 6.519 kb on - strand at 6.519 kb on - strand at 6.519 kb on - strand at 6.519 kb on - strand at 6.549 kb on + strand at 6.550 kb on - strand at 6.550 kb on - strand at 6.588 kb on + strand at 6.588 kb on + strand at 6.588 kb on + strand at 6.588 kb on + strand at 6.589 kb on - strand at 6.589 kb on - strand at 6.589 kb on - strand at 6.596 kb on + strand at 6.597 kb on - strand at 6.597 kb on - strand at 6.599 kb on - strand at 6.606 kb on + strand at 6.606 kb on + strand at 6.606 kb on + strand at 6.606 kb on + strand at 6.672 kb on - strand at 6.672 kb on - strand at 6.672 kb on - strand at 6.673 kb on + strand at 6.673 kb on + strand at 6.674 kb on - strand at 6.722 kb on - strand at 6.830 kb on - strand at 7.007 kb on + strand, within H281DRAFT_05734 at 7.008 kb on - strand, within H281DRAFT_05734 at 7.076 kb on + strand, within H281DRAFT_05734 at 7.076 kb on + strand, within H281DRAFT_05734 at 7.246 kb on + strand, within H281DRAFT_05734 at 7.247 kb on - strand, within H281DRAFT_05734
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 5,015 - +0.0 5,044 + -0.3 5,044 + +0.4 5,044 + -0.7 5,044 + -0.3 5,044 + -0.2 5,044 + -0.0 5,045 - +0.1 5,045 - +0.1 5,045 - +0.4 5,045 - +0.1 5,045 - +0.6 5,048 + +0.5 5,049 - -0.5 5,049 - -0.6 5,049 - -0.9 5,049 - -0.1 5,049 - -1.0 5,049 - -0.1 5,049 - +1.1 5,049 - -0.5 5,049 - -0.4 5,050 + +0.2 5,051 - -1.3 5,198 - H281DRAFT_05732 0.19 -0.3 5,233 + H281DRAFT_05732 0.23 +0.2 5,269 + H281DRAFT_05732 0.27 -0.6 5,269 + H281DRAFT_05732 0.27 -0.4 5,270 - H281DRAFT_05732 0.27 +0.0 5,270 - +1.1 5,270 - H281DRAFT_05732 0.27 +0.1 5,441 + H281DRAFT_05732 0.48 -0.3 5,441 + H281DRAFT_05732 0.48 +0.3 5,495 + H281DRAFT_05732 0.55 -1.0 5,495 + H281DRAFT_05732 0.55 -0.1 5,495 + H281DRAFT_05732 0.55 +0.4 5,495 + H281DRAFT_05732 0.55 -0.5 5,495 + H281DRAFT_05732 0.55 +0.5 5,496 - H281DRAFT_05732 0.55 +0.5 5,496 - H281DRAFT_05732 0.55 -0.1 5,496 - H281DRAFT_05732 0.55 -0.5 5,496 - H281DRAFT_05732 0.55 -0.1 5,496 - H281DRAFT_05732 0.55 -0.1 5,564 + H281DRAFT_05732 0.63 -0.3 5,564 + H281DRAFT_05732 0.63 -0.1 5,565 - H281DRAFT_05732 0.63 -0.2 5,565 - H281DRAFT_05732 0.63 +0.5 5,573 + H281DRAFT_05732 0.64 -0.1 5,573 + H281DRAFT_05732 0.64 +0.4 5,574 - H281DRAFT_05732 0.64 -0.1 5,928 + -0.5 5,928 + -0.1 5,929 - -0.0 5,929 - +0.5 5,964 + +0.0 5,964 + +0.0 5,965 - +0.5 5,965 - -0.9 5,968 + +0.6 5,969 - +0.4 5,969 - +0.3 5,984 + +0.3 5,985 - +1.1 5,998 - -0.1 6,105 + H281DRAFT_05733 0.35 -0.3 6,105 + H281DRAFT_05733 0.35 -0.2 6,105 + H281DRAFT_05733 0.35 +0.1 6,106 - H281DRAFT_05733 0.35 -0.2 6,106 - -0.9 6,140 - H281DRAFT_05733 0.46 -0.1 6,147 + H281DRAFT_05733 0.48 -0.6 6,193 - H281DRAFT_05733 0.63 +0.0 6,193 - H281DRAFT_05733 0.63 -0.2 6,245 + H281DRAFT_05733 0.80 -0.4 6,368 + +0.1 6,368 + -0.3 6,368 + +0.1 6,369 - +2.6 6,518 + -0.0 6,518 + -0.0 6,518 + +0.4 6,518 + -1.4 6,519 - +0.0 6,519 - +0.2 6,519 - +0.1 6,519 - -0.8 6,549 + +1.1 6,550 - +0.1 6,550 - -0.8 6,588 + -0.1 6,588 + +0.2 6,588 + +0.4 6,588 + +0.5 6,589 - -0.4 6,589 - +0.4 6,589 - -0.2 6,596 + -0.2 6,597 - +0.2 6,597 - -0.3 6,599 - -2.1 6,606 + +0.4 6,606 + +0.4 6,606 + +0.2 6,606 + -0.3 6,672 - -0.4 6,672 - +0.7 6,672 - -0.1 6,673 + +0.5 6,673 + -1.7 6,674 - -0.0 6,722 - -0.9 6,830 - +0.2 7,007 + H281DRAFT_05734 0.31 -0.1 7,008 - H281DRAFT_05734 0.32 +0.1 7,076 + H281DRAFT_05734 0.41 -0.5 7,076 + H281DRAFT_05734 0.41 +0.3 7,246 + H281DRAFT_05734 0.64 -0.6 7,247 - H281DRAFT_05734 0.64 -0.4
Or see this region's nucleotide sequence