Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05629 and H281DRAFT_05630 are separated by 66 nucleotides H281DRAFT_05630 and H281DRAFT_05631 are separated by 102 nucleotides H281DRAFT_05631 and H281DRAFT_05632 are separated by 88 nucleotides H281DRAFT_05632 and H281DRAFT_05633 are separated by 85 nucleotides
H281DRAFT_05629: H281DRAFT_05629 - hypothetical protein, at 54,769 to 55,506
_05629
H281DRAFT_05630: H281DRAFT_05630 - flagellar L-ring protein precursor FlgH, at 55,573 to 56,241
_05630
H281DRAFT_05631: H281DRAFT_05631 - two component transcriptional regulator, winged helix family, at 56,344 to 57,087
_05631
H281DRAFT_05632: H281DRAFT_05632 - hypothetical protein, at 57,176 to 57,823
_05632
H281DRAFT_05633: H281DRAFT_05633 - hypothetical protein, at 57,909 to 58,370
_05633
Position (kb) 56
57
58 Strain fitness (log2 ratio) -1
0
1
2 at 55.357 kb on + strand, within H281DRAFT_05629 at 55.357 kb on + strand, within H281DRAFT_05629 at 55.357 kb on + strand, within H281DRAFT_05629 at 55.358 kb on - strand, within H281DRAFT_05629 at 55.361 kb on + strand, within H281DRAFT_05629 at 55.361 kb on + strand, within H281DRAFT_05629 at 55.362 kb on - strand, within H281DRAFT_05629 at 55.430 kb on - strand, within H281DRAFT_05629 at 55.578 kb on + strand at 55.717 kb on + strand, within H281DRAFT_05630 at 55.744 kb on + strand, within H281DRAFT_05630 at 55.744 kb on + strand, within H281DRAFT_05630 at 55.745 kb on - strand, within H281DRAFT_05630 at 55.804 kb on + strand, within H281DRAFT_05630 at 55.805 kb on - strand, within H281DRAFT_05630 at 55.806 kb on + strand, within H281DRAFT_05630 at 55.818 kb on + strand, within H281DRAFT_05630 at 56.101 kb on - strand, within H281DRAFT_05630 at 56.122 kb on + strand, within H281DRAFT_05630 at 56.123 kb on - strand, within H281DRAFT_05630 at 56.154 kb on + strand, within H281DRAFT_05630 at 56.154 kb on + strand, within H281DRAFT_05630 at 56.154 kb on + strand, within H281DRAFT_05630 at 57.026 kb on + strand at 57.027 kb on - strand at 57.046 kb on + strand at 57.047 kb on - strand at 57.100 kb on - strand at 57.155 kb on - strand at 57.155 kb on - strand at 57.375 kb on + strand, within H281DRAFT_05632 at 57.376 kb on - strand, within H281DRAFT_05632 at 57.615 kb on + strand, within H281DRAFT_05632 at 58.013 kb on + strand, within H281DRAFT_05633
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 55,357 + H281DRAFT_05629 0.80 -0.8 55,357 + H281DRAFT_05629 0.80 +0.0 55,357 + H281DRAFT_05629 0.80 +0.7 55,358 - H281DRAFT_05629 0.80 -0.3 55,361 + H281DRAFT_05629 0.80 +0.2 55,361 + H281DRAFT_05629 0.80 +2.0 55,362 - H281DRAFT_05629 0.80 +1.0 55,430 - H281DRAFT_05629 0.90 +0.6 55,578 + -0.1 55,717 + H281DRAFT_05630 0.22 +0.3 55,744 + H281DRAFT_05630 0.26 +0.2 55,744 + H281DRAFT_05630 0.26 -0.7 55,745 - H281DRAFT_05630 0.26 +0.3 55,804 + H281DRAFT_05630 0.35 -0.7 55,805 - H281DRAFT_05630 0.35 +0.2 55,806 + H281DRAFT_05630 0.35 +0.5 55,818 + H281DRAFT_05630 0.37 +0.4 56,101 - H281DRAFT_05630 0.79 -0.3 56,122 + H281DRAFT_05630 0.82 -0.1 56,123 - H281DRAFT_05630 0.82 -0.0 56,154 + H281DRAFT_05630 0.87 +1.2 56,154 + H281DRAFT_05630 0.87 +0.7 56,154 + H281DRAFT_05630 0.87 -0.3 57,026 + -0.4 57,027 - -0.9 57,046 + +1.0 57,047 - +0.9 57,100 - -0.1 57,155 - -0.4 57,155 - +1.1 57,375 + H281DRAFT_05632 0.31 -0.1 57,376 - H281DRAFT_05632 0.31 +0.3 57,615 + H281DRAFT_05632 0.68 +0.4 58,013 + H281DRAFT_05633 0.23 +0.6
Or see this region's nucleotide sequence