Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05219 and H281DRAFT_05220 are separated by 66 nucleotides H281DRAFT_05220 and H281DRAFT_05221 are separated by 406 nucleotides H281DRAFT_05221 and H281DRAFT_05222 are separated by 102 nucleotides H281DRAFT_05222 and H281DRAFT_05223 overlap by 4 nucleotides
H281DRAFT_05219: H281DRAFT_05219 - transcriptional regulator, LysR family, at 180,758 to 181,642
_05219
H281DRAFT_05220: H281DRAFT_05220 - transcriptional regulator, AsnC family, at 181,709 to 182,167
_05220
H281DRAFT_05221: H281DRAFT_05221 - Saccharopine dehydrogenase, NADP-dependent, at 182,574 to 183,680
_05221
H281DRAFT_05222: H281DRAFT_05222 - Dephospho-CoA kinase, at 183,783 to 184,403
_05222
H281DRAFT_05223: H281DRAFT_05223 - hypothetical protein, at 184,400 to 184,699
_05223
Position (kb) 182
183
184 Strain fitness (log2 ratio) -2
-1
0
1 at 181.922 kb on + strand, within H281DRAFT_05220 at 181.922 kb on + strand, within H281DRAFT_05220 at 181.928 kb on + strand, within H281DRAFT_05220 at 181.928 kb on + strand, within H281DRAFT_05220 at 182.008 kb on - strand, within H281DRAFT_05220 at 182.034 kb on - strand, within H281DRAFT_05220 at 182.120 kb on - strand, within H281DRAFT_05220 at 182.484 kb on - strand at 182.532 kb on + strand at 182.532 kb on + strand at 182.574 kb on - strand at 182.574 kb on - strand at 182.845 kb on - strand, within H281DRAFT_05221 at 183.090 kb on + strand, within H281DRAFT_05221 at 183.259 kb on - strand, within H281DRAFT_05221 at 183.259 kb on - strand, within H281DRAFT_05221 at 183.268 kb on + strand at 183.633 kb on + strand at 183.941 kb on - strand, within H281DRAFT_05222 at 184.266 kb on - strand, within H281DRAFT_05222 at 184.268 kb on - strand, within H281DRAFT_05222 at 184.268 kb on - strand, within H281DRAFT_05222 at 184.268 kb on - strand, within H281DRAFT_05222 at 184.276 kb on + strand, within H281DRAFT_05222 at 184.385 kb on + strand at 184.386 kb on - strand at 184.462 kb on + strand, within H281DRAFT_05223 at 184.462 kb on + strand, within H281DRAFT_05223 at 184.462 kb on + strand, within H281DRAFT_05223 at 184.652 kb on - strand, within H281DRAFT_05223 at 184.652 kb on - strand, within H281DRAFT_05223
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 181,922 + H281DRAFT_05220 0.46 -0.5 181,922 + H281DRAFT_05220 0.46 +0.0 181,928 + H281DRAFT_05220 0.48 +0.4 181,928 + H281DRAFT_05220 0.48 +0.4 182,008 - H281DRAFT_05220 0.65 -2.0 182,034 - H281DRAFT_05220 0.71 -0.3 182,120 - H281DRAFT_05220 0.90 +0.0 182,484 - -0.3 182,532 + +0.1 182,532 + +0.1 182,574 - +0.2 182,574 - -0.5 182,845 - H281DRAFT_05221 0.24 +0.1 183,090 + H281DRAFT_05221 0.47 +0.4 183,259 - H281DRAFT_05221 0.62 +1.2 183,259 - H281DRAFT_05221 0.62 +0.4 183,268 + -1.3 183,633 + +0.0 183,941 - H281DRAFT_05222 0.25 +0.1 184,266 - H281DRAFT_05222 0.78 +0.3 184,268 - H281DRAFT_05222 0.78 -0.1 184,268 - H281DRAFT_05222 0.78 +0.0 184,268 - H281DRAFT_05222 0.78 -0.2 184,276 + H281DRAFT_05222 0.79 +0.2 184,385 + +0.3 184,386 - +0.2 184,462 + H281DRAFT_05223 0.21 +0.4 184,462 + H281DRAFT_05223 0.21 +0.1 184,462 + H281DRAFT_05223 0.21 +0.3 184,652 - H281DRAFT_05223 0.84 -0.1 184,652 - H281DRAFT_05223 0.84 +0.1
Or see this region's nucleotide sequence