Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05209 and H281DRAFT_05210 are separated by 174 nucleotides H281DRAFT_05210 and H281DRAFT_05211 are separated by 88 nucleotides
H281DRAFT_05209: H281DRAFT_05209 - transcriptional regulator, LysR family, at 171,454 to 172,344
_05209
H281DRAFT_05210: H281DRAFT_05210 - Sugar phosphate isomerase/epimerase, at 172,519 to 173,292
_05210
H281DRAFT_05211: H281DRAFT_05211 - 2-dehydro-3-deoxygluconokinase, at 173,381 to 174,370
_05211
Position (kb) 172
173
174 Strain fitness (log2 ratio) -1
0
1
2 at 171.595 kb on + strand, within H281DRAFT_05209 at 171.595 kb on + strand, within H281DRAFT_05209 at 171.596 kb on - strand, within H281DRAFT_05209 at 171.694 kb on + strand, within H281DRAFT_05209 at 171.694 kb on + strand, within H281DRAFT_05209 at 171.694 kb on + strand, within H281DRAFT_05209 at 171.694 kb on + strand, within H281DRAFT_05209 at 171.695 kb on - strand, within H281DRAFT_05209 at 171.695 kb on - strand, within H281DRAFT_05209 at 171.695 kb on - strand, within H281DRAFT_05209 at 171.695 kb on - strand, within H281DRAFT_05209 at 171.696 kb on + strand, within H281DRAFT_05209 at 171.697 kb on - strand, within H281DRAFT_05209 at 171.763 kb on + strand, within H281DRAFT_05209 at 171.764 kb on - strand, within H281DRAFT_05209 at 171.838 kb on - strand, within H281DRAFT_05209 at 171.873 kb on + strand, within H281DRAFT_05209 at 172.348 kb on - strand at 172.538 kb on + strand at 173.090 kb on - strand, within H281DRAFT_05210 at 173.301 kb on + strand at 173.363 kb on + strand at 173.418 kb on - strand at 173.418 kb on - strand at 173.589 kb on - strand, within H281DRAFT_05211 at 173.589 kb on - strand, within H281DRAFT_05211 at 173.589 kb on - strand, within H281DRAFT_05211 at 173.711 kb on + strand, within H281DRAFT_05211 at 173.711 kb on + strand, within H281DRAFT_05211 at 173.712 kb on - strand, within H281DRAFT_05211 at 173.769 kb on - strand, within H281DRAFT_05211 at 173.773 kb on - strand, within H281DRAFT_05211 at 174.016 kb on + strand, within H281DRAFT_05211
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 171,595 + H281DRAFT_05209 0.16 +0.4 171,595 + H281DRAFT_05209 0.16 -0.1 171,596 - H281DRAFT_05209 0.16 -0.0 171,694 + H281DRAFT_05209 0.27 +0.0 171,694 + H281DRAFT_05209 0.27 +0.5 171,694 + H281DRAFT_05209 0.27 +0.2 171,694 + H281DRAFT_05209 0.27 -0.8 171,695 - H281DRAFT_05209 0.27 +0.4 171,695 - H281DRAFT_05209 0.27 -0.2 171,695 - H281DRAFT_05209 0.27 -0.1 171,695 - H281DRAFT_05209 0.27 +0.1 171,696 + H281DRAFT_05209 0.27 +2.1 171,697 - H281DRAFT_05209 0.27 -0.0 171,763 + H281DRAFT_05209 0.35 -0.1 171,764 - H281DRAFT_05209 0.35 -0.4 171,838 - H281DRAFT_05209 0.43 -0.2 171,873 + H281DRAFT_05209 0.47 -0.2 172,348 - +0.5 172,538 + -0.7 173,090 - H281DRAFT_05210 0.74 +0.6 173,301 + +0.1 173,363 + +0.1 173,418 - +0.1 173,418 - +1.1 173,589 - H281DRAFT_05211 0.21 -0.0 173,589 - H281DRAFT_05211 0.21 +1.0 173,589 - H281DRAFT_05211 0.21 +0.4 173,711 + H281DRAFT_05211 0.33 +0.2 173,711 + H281DRAFT_05211 0.33 +0.5 173,712 - H281DRAFT_05211 0.33 +0.1 173,769 - H281DRAFT_05211 0.39 +0.7 173,773 - H281DRAFT_05211 0.40 +0.1 174,016 + H281DRAFT_05211 0.64 +0.1
Or see this region's nucleotide sequence