Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05001

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05000 and H281DRAFT_05001 overlap by 4 nucleotidesH281DRAFT_05001 and H281DRAFT_05002 overlap by 16 nucleotidesH281DRAFT_05002 and H281DRAFT_05003 overlap by 4 nucleotides H281DRAFT_05000: H281DRAFT_05000 - ATP synthase in type III secretion protein N, at 185,882 to 187,276 _05000 H281DRAFT_05001: H281DRAFT_05001 - type III secretion protein L, at 187,273 to 188,052 _05001 H281DRAFT_05002: H281DRAFT_05002 - type III secretion protein (HrpB4), at 188,037 to 188,852 _05002 H281DRAFT_05003: H281DRAFT_05003 - type III secretion apparatus lipoprotein, YscJ/HrcJ family, at 188,849 to 189,670 _05003 Position (kb) 187 188 189Strain fitness (log2 ratio) -1 0 1at 186.501 kb on + strand, within H281DRAFT_05000at 187.568 kb on + strand, within H281DRAFT_05001at 187.569 kb on - strand, within H281DRAFT_05001at 188.249 kb on + strand, within H281DRAFT_05002at 188.689 kb on + strand, within H281DRAFT_05002at 188.690 kb on - strand, within H281DRAFT_05002at 188.694 kb on - strand, within H281DRAFT_05002at 188.833 kb on + strandat 188.834 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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186,501 + H281DRAFT_05000 0.44 +0.8
187,568 + H281DRAFT_05001 0.38 +0.6
187,569 - H281DRAFT_05001 0.38 -0.4
188,249 + H281DRAFT_05002 0.26 -0.3
188,689 + H281DRAFT_05002 0.80 +0.4
188,690 - H281DRAFT_05002 0.80 -0.4
188,694 - H281DRAFT_05002 0.81 +0.2
188,833 + -0.2
188,834 - +1.1

Or see this region's nucleotide sequence