Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04848

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04847 and H281DRAFT_04848 are separated by 445 nucleotidesH281DRAFT_04848 and H281DRAFT_04849 overlap by 4 nucleotidesH281DRAFT_04849 and H281DRAFT_04850 are separated by 14 nucleotides H281DRAFT_04847: H281DRAFT_04847 - mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22)/mannose-6-phosphate isomerase, type 2 (EC 5.3.1.8), at 288,718 to 290,151 _04847 H281DRAFT_04848: H281DRAFT_04848 - hypothetical protein, at 290,597 to 291,442 _04848 H281DRAFT_04849: H281DRAFT_04849 - UDP-glucose 4-epimerase, at 291,439 to 292,395 _04849 H281DRAFT_04850: H281DRAFT_04850 - UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase, at 292,410 to 293,435 _04850 Position (kb) 290 291 292Strain fitness (log2 ratio) -2 -1 0 1at 289.677 kb on - strand, within H281DRAFT_04847at 289.677 kb on - strand, within H281DRAFT_04847at 289.682 kb on + strand, within H281DRAFT_04847at 289.720 kb on - strand, within H281DRAFT_04847at 289.864 kb on + strand, within H281DRAFT_04847at 289.865 kb on - strand, within H281DRAFT_04847at 289.897 kb on + strand, within H281DRAFT_04847at 289.908 kb on + strand, within H281DRAFT_04847at 289.908 kb on + strand, within H281DRAFT_04847at 289.908 kb on + strand, within H281DRAFT_04847at 289.908 kb on + strand, within H281DRAFT_04847at 289.908 kb on + strand, within H281DRAFT_04847at 289.908 kb on + strand, within H281DRAFT_04847at 289.908 kb on + strand, within H281DRAFT_04847at 289.909 kb on - strand, within H281DRAFT_04847at 290.034 kb on + strandat 290.034 kb on + strandat 290.136 kb on + strandat 290.137 kb on - strandat 290.137 kb on - strandat 290.137 kb on - strandat 290.137 kb on - strandat 290.137 kb on - strandat 290.140 kb on + strandat 290.140 kb on + strandat 290.141 kb on - strandat 290.141 kb on - strandat 290.141 kb on - strandat 290.141 kb on - strandat 290.141 kb on - strandat 290.169 kb on - strandat 290.169 kb on - strandat 290.335 kb on + strandat 290.335 kb on + strandat 290.336 kb on - strandat 290.336 kb on - strandat 290.378 kb on - strandat 290.378 kb on - strandat 290.394 kb on + strandat 290.395 kb on - strandat 290.462 kb on + strandat 290.463 kb on - strandat 290.463 kb on - strandat 290.463 kb on - strandat 290.476 kb on + strandat 290.476 kb on + strandat 290.476 kb on + strandat 290.476 kb on + strandat 290.605 kb on + strandat 290.605 kb on + strandat 290.605 kb on + strandat 290.606 kb on - strandat 290.606 kb on - strandat 290.629 kb on + strandat 291.039 kb on - strand, within H281DRAFT_04848at 291.135 kb on - strand, within H281DRAFT_04848at 291.151 kb on - strandat 291.151 kb on - strand, within H281DRAFT_04848at 291.151 kb on - strand, within H281DRAFT_04848at 291.933 kb on - strand, within H281DRAFT_04849at 291.956 kb on - strand, within H281DRAFT_04849at 292.058 kb on - strand, within H281DRAFT_04849

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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289,677 - H281DRAFT_04847 0.67 +0.1
289,677 - H281DRAFT_04847 0.67 +0.9
289,682 + H281DRAFT_04847 0.67 +0.4
289,720 - H281DRAFT_04847 0.70 +0.7
289,864 + H281DRAFT_04847 0.80 +0.7
289,865 - H281DRAFT_04847 0.80 -0.6
289,897 + H281DRAFT_04847 0.82 +0.4
289,908 + H281DRAFT_04847 0.83 -0.1
289,908 + H281DRAFT_04847 0.83 +0.4
289,908 + H281DRAFT_04847 0.83 -0.3
289,908 + H281DRAFT_04847 0.83 +0.4
289,908 + H281DRAFT_04847 0.83 +0.6
289,908 + H281DRAFT_04847 0.83 +0.1
289,908 + H281DRAFT_04847 0.83 +0.9
289,909 - H281DRAFT_04847 0.83 +0.2
290,034 + +0.4
290,034 + -0.7
290,136 + +0.4
290,137 - +0.1
290,137 - +0.3
290,137 - +0.4
290,137 - +0.8
290,137 - +0.3
290,140 + +0.5
290,140 + +0.3
290,141 - -0.3
290,141 - -2.0
290,141 - -0.0
290,141 - +0.4
290,141 - +0.2
290,169 - +0.5
290,169 - -0.2
290,335 + +0.8
290,335 + -0.0
290,336 - +0.4
290,336 - +0.6
290,378 - +0.7
290,378 - +0.3
290,394 + +0.1
290,395 - -0.3
290,462 + +0.5
290,463 - +0.6
290,463 - +0.4
290,463 - -0.1
290,476 + +0.5
290,476 + -0.2
290,476 + -0.6
290,476 + -0.3
290,605 + +0.8
290,605 + -1.3
290,605 + -0.5
290,606 - +0.4
290,606 - +1.0
290,629 + +0.8
291,039 - H281DRAFT_04848 0.52 +0.5
291,135 - H281DRAFT_04848 0.64 +1.0
291,151 - +1.3
291,151 - H281DRAFT_04848 0.65 +0.5
291,151 - H281DRAFT_04848 0.65 +0.7
291,933 - H281DRAFT_04849 0.52 -0.6
291,956 - H281DRAFT_04849 0.54 +0.5
292,058 - H281DRAFT_04849 0.65 +0.3

Or see this region's nucleotide sequence