Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04431 and H281DRAFT_04432 are separated by 175 nucleotides H281DRAFT_04432 and H281DRAFT_04433 are separated by 650 nucleotides
H281DRAFT_04431: H281DRAFT_04431 - Membrane-bound metallopeptidase, at 148,122 to 148,838
_04431
H281DRAFT_04432: H281DRAFT_04432 - Galactose mutarotase, at 149,014 to 149,922
_04432
H281DRAFT_04433: H281DRAFT_04433 - Undecaprenyl-diphosphatase, at 150,573 to 151,403
_04433
Position (kb) 149
150 Strain fitness (log2 ratio) -2
-1
0
1 at 148.024 kb on + strand at 148.100 kb on + strand at 148.100 kb on + strand at 148.101 kb on - strand at 148.123 kb on + strand at 148.297 kb on + strand, within H281DRAFT_04431 at 148.623 kb on + strand, within H281DRAFT_04431 at 148.624 kb on - strand, within H281DRAFT_04431 at 148.624 kb on - strand, within H281DRAFT_04431 at 148.700 kb on + strand, within H281DRAFT_04431 at 148.700 kb on + strand, within H281DRAFT_04431 at 148.700 kb on + strand at 148.818 kb on - strand at 148.888 kb on - strand at 148.891 kb on + strand at 148.891 kb on + strand at 148.891 kb on + strand at 148.892 kb on - strand at 148.892 kb on - strand at 148.892 kb on - strand at 149.016 kb on - strand at 149.016 kb on - strand at 149.094 kb on + strand at 149.135 kb on + strand, within H281DRAFT_04432 at 149.135 kb on + strand, within H281DRAFT_04432 at 149.135 kb on + strand, within H281DRAFT_04432 at 149.136 kb on - strand at 149.136 kb on - strand, within H281DRAFT_04432 at 149.248 kb on + strand, within H281DRAFT_04432 at 149.248 kb on + strand, within H281DRAFT_04432 at 149.249 kb on - strand at 149.249 kb on - strand, within H281DRAFT_04432 at 149.249 kb on - strand, within H281DRAFT_04432 at 149.316 kb on - strand, within H281DRAFT_04432 at 149.432 kb on + strand, within H281DRAFT_04432 at 149.432 kb on + strand, within H281DRAFT_04432 at 149.433 kb on - strand, within H281DRAFT_04432 at 149.453 kb on + strand, within H281DRAFT_04432 at 149.454 kb on - strand, within H281DRAFT_04432 at 149.454 kb on - strand, within H281DRAFT_04432 at 149.943 kb on - strand at 149.943 kb on - strand at 149.949 kb on + strand at 149.950 kb on - strand at 150.023 kb on + strand at 150.024 kb on - strand at 150.108 kb on + strand at 150.113 kb on - strand at 150.143 kb on - strand at 150.203 kb on + strand at 150.204 kb on - strand at 150.212 kb on + strand at 150.418 kb on + strand at 150.418 kb on + strand at 150.419 kb on - strand at 150.419 kb on - strand at 150.419 kb on - strand at 150.419 kb on - strand at 150.419 kb on - strand at 150.419 kb on - strand at 150.419 kb on - strand at 150.441 kb on + strand at 150.492 kb on + strand at 150.492 kb on + strand at 150.493 kb on - strand at 150.559 kb on - strand at 150.591 kb on - strand at 150.650 kb on + strand at 150.650 kb on + strand at 150.651 kb on - strand at 150.651 kb on - strand at 150.683 kb on + strand, within H281DRAFT_04433 at 150.683 kb on + strand, within H281DRAFT_04433 at 150.787 kb on + strand, within H281DRAFT_04433 at 150.905 kb on - strand, within H281DRAFT_04433
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 148,024 + +1.1 148,100 + +0.4 148,100 + +0.1 148,101 - +0.1 148,123 + -0.0 148,297 + H281DRAFT_04431 0.24 +0.6 148,623 + H281DRAFT_04431 0.70 +0.2 148,624 - H281DRAFT_04431 0.70 +1.7 148,624 - H281DRAFT_04431 0.70 +0.7 148,700 + H281DRAFT_04431 0.81 -0.3 148,700 + H281DRAFT_04431 0.81 -0.0 148,700 + +1.0 148,818 - +0.3 148,888 - +0.0 148,891 + -0.2 148,891 + +0.2 148,891 + -0.1 148,892 - +0.7 148,892 - +0.6 148,892 - +0.3 149,016 - -0.6 149,016 - -0.3 149,094 + -0.0 149,135 + H281DRAFT_04432 0.13 +0.8 149,135 + H281DRAFT_04432 0.13 -0.1 149,135 + H281DRAFT_04432 0.13 -0.6 149,136 - -0.4 149,136 - H281DRAFT_04432 0.13 +1.2 149,248 + H281DRAFT_04432 0.26 +0.3 149,248 + H281DRAFT_04432 0.26 -0.9 149,249 - -0.7 149,249 - H281DRAFT_04432 0.26 -0.1 149,249 - H281DRAFT_04432 0.26 +0.3 149,316 - H281DRAFT_04432 0.33 +0.2 149,432 + H281DRAFT_04432 0.46 -0.1 149,432 + H281DRAFT_04432 0.46 +0.3 149,433 - H281DRAFT_04432 0.46 +0.3 149,453 + H281DRAFT_04432 0.48 +0.3 149,454 - H281DRAFT_04432 0.48 -0.3 149,454 - H281DRAFT_04432 0.48 +0.4 149,943 - -0.5 149,943 - +0.6 149,949 + -0.2 149,950 - +0.3 150,023 + +0.5 150,024 - +0.8 150,108 + -0.1 150,113 - +0.9 150,143 - +0.1 150,203 + -0.2 150,204 - +0.6 150,212 + +0.2 150,418 + -0.3 150,418 + -1.0 150,419 - -0.2 150,419 - +0.7 150,419 - +0.0 150,419 - +0.4 150,419 - +0.0 150,419 - -0.3 150,419 - -0.3 150,441 + +0.5 150,492 + -0.9 150,492 + +0.1 150,493 - -2.1 150,559 - -0.2 150,591 - +0.1 150,650 + +0.3 150,650 + +0.6 150,651 - -0.3 150,651 - +0.2 150,683 + H281DRAFT_04433 0.13 +0.7 150,683 + H281DRAFT_04433 0.13 +0.3 150,787 + H281DRAFT_04433 0.26 +1.3 150,905 - H281DRAFT_04433 0.40 +0.6
Or see this region's nucleotide sequence