Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04268 and H281DRAFT_04269 overlap by 1 nucleotides H281DRAFT_04269 and H281DRAFT_04270 are separated by 82 nucleotides H281DRAFT_04270 and H281DRAFT_04271 are separated by 285 nucleotides
H281DRAFT_04268: H281DRAFT_04268 - L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein, at 386,091 to 386,768
_04268
H281DRAFT_04269: H281DRAFT_04269 - L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein, at 386,768 to 387,508
_04269
H281DRAFT_04270: H281DRAFT_04270 - L-glutamate-binding protein /L-aspartate-binding protein, at 387,591 to 388,484
_04270
H281DRAFT_04271: H281DRAFT_04271 - glutamate dehydrogenase (NAD(P)+), at 388,770 to 390,083
_04271
Position (kb) 387
388
389 Strain fitness (log2 ratio) -1
0
1
2 at 386.593 kb on + strand, within H281DRAFT_04268 at 386.593 kb on + strand, within H281DRAFT_04268 at 386.594 kb on - strand, within H281DRAFT_04268 at 386.594 kb on - strand, within H281DRAFT_04268 at 386.782 kb on + strand at 386.784 kb on + strand at 386.853 kb on + strand, within H281DRAFT_04269 at 386.883 kb on + strand, within H281DRAFT_04269 at 386.883 kb on + strand, within H281DRAFT_04269 at 386.884 kb on - strand, within H281DRAFT_04269 at 386.899 kb on - strand, within H281DRAFT_04269 at 386.974 kb on + strand, within H281DRAFT_04269 at 386.974 kb on + strand, within H281DRAFT_04269 at 386.974 kb on + strand, within H281DRAFT_04269 at 386.975 kb on - strand, within H281DRAFT_04269 at 386.975 kb on - strand, within H281DRAFT_04269 at 387.036 kb on + strand, within H281DRAFT_04269 at 387.036 kb on + strand, within H281DRAFT_04269 at 387.243 kb on - strand, within H281DRAFT_04269 at 387.252 kb on + strand, within H281DRAFT_04269 at 387.253 kb on - strand, within H281DRAFT_04269 at 387.253 kb on - strand, within H281DRAFT_04269 at 387.304 kb on - strand, within H281DRAFT_04269 at 387.304 kb on - strand, within H281DRAFT_04269 at 387.444 kb on + strand at 387.444 kb on + strand at 387.445 kb on - strand at 387.445 kb on - strand at 387.501 kb on + strand at 387.502 kb on - strand at 387.502 kb on - strand at 387.502 kb on - strand at 387.585 kb on + strand at 387.585 kb on + strand at 387.586 kb on - strand at 387.586 kb on - strand at 387.592 kb on + strand at 387.704 kb on - strand, within H281DRAFT_04270 at 387.704 kb on - strand, within H281DRAFT_04270 at 387.799 kb on + strand, within H281DRAFT_04270 at 387.800 kb on - strand, within H281DRAFT_04270 at 388.151 kb on + strand, within H281DRAFT_04270 at 388.206 kb on - strand, within H281DRAFT_04270 at 388.333 kb on + strand, within H281DRAFT_04270 at 388.333 kb on + strand, within H281DRAFT_04270 at 388.337 kb on - strand, within H281DRAFT_04270 at 388.376 kb on + strand, within H281DRAFT_04270 at 388.407 kb on - strand at 388.518 kb on + strand at 388.526 kb on + strand at 388.530 kb on + strand at 388.530 kb on + strand at 388.541 kb on + strand at 388.541 kb on + strand at 388.547 kb on + strand at 388.548 kb on - strand at 388.548 kb on - strand at 388.549 kb on + strand at 388.550 kb on - strand at 388.550 kb on - strand at 388.602 kb on + strand at 388.620 kb on + strand at 388.623 kb on - strand at 388.623 kb on - strand at 388.623 kb on - strand at 388.623 kb on - strand at 388.623 kb on - strand at 388.623 kb on - strand at 388.733 kb on + strand at 388.734 kb on - strand at 388.758 kb on + strand at 388.758 kb on + strand at 388.759 kb on - strand at 388.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 386,593 + H281DRAFT_04268 0.74 +0.7 386,593 + H281DRAFT_04268 0.74 +0.7 386,594 - H281DRAFT_04268 0.74 +0.2 386,594 - H281DRAFT_04268 0.74 +0.1 386,782 + -0.0 386,784 + +1.7 386,853 + H281DRAFT_04269 0.11 -0.0 386,883 + H281DRAFT_04269 0.16 +0.7 386,883 + H281DRAFT_04269 0.16 +0.7 386,884 - H281DRAFT_04269 0.16 +0.2 386,899 - H281DRAFT_04269 0.18 +1.2 386,974 + H281DRAFT_04269 0.28 +2.0 386,974 + H281DRAFT_04269 0.28 +0.5 386,974 + H281DRAFT_04269 0.28 +0.8 386,975 - H281DRAFT_04269 0.28 +0.7 386,975 - H281DRAFT_04269 0.28 +0.7 387,036 + H281DRAFT_04269 0.36 +0.6 387,036 + H281DRAFT_04269 0.36 +0.3 387,243 - H281DRAFT_04269 0.64 -0.1 387,252 + H281DRAFT_04269 0.65 +1.0 387,253 - H281DRAFT_04269 0.65 -0.0 387,253 - H281DRAFT_04269 0.65 +0.1 387,304 - H281DRAFT_04269 0.72 +0.6 387,304 - H281DRAFT_04269 0.72 +0.2 387,444 + +0.3 387,444 + -0.5 387,445 - -0.1 387,445 - +0.1 387,501 + -0.3 387,502 - -0.0 387,502 - +0.4 387,502 - +0.2 387,585 + +0.4 387,585 + +0.6 387,586 - +0.6 387,586 - +0.5 387,592 + +0.4 387,704 - H281DRAFT_04270 0.13 +0.8 387,704 - H281DRAFT_04270 0.13 +0.8 387,799 + H281DRAFT_04270 0.23 +0.9 387,800 - H281DRAFT_04270 0.23 +0.4 388,151 + H281DRAFT_04270 0.63 +0.8 388,206 - H281DRAFT_04270 0.69 +0.9 388,333 + H281DRAFT_04270 0.83 +1.0 388,333 + H281DRAFT_04270 0.83 +0.6 388,337 - H281DRAFT_04270 0.83 +0.3 388,376 + H281DRAFT_04270 0.88 +0.1 388,407 - +0.8 388,518 + +0.2 388,526 + +0.2 388,530 + +0.6 388,530 + +0.8 388,541 + -1.1 388,541 + +0.7 388,547 + +0.3 388,548 - +0.3 388,548 - +0.7 388,549 + +0.4 388,550 - -0.2 388,550 - +0.3 388,602 + +0.1 388,620 + +0.3 388,623 - -0.7 388,623 - -0.1 388,623 - -0.1 388,623 - -1.1 388,623 - -0.1 388,623 - +0.1 388,733 + +0.5 388,734 - -0.0 388,758 + -0.7 388,758 + +0.5 388,759 - +0.5 388,759 - +1.2
Or see this region's nucleotide sequence