Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04268

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04266 and H281DRAFT_04267 are separated by 122 nucleotidesH281DRAFT_04267 and H281DRAFT_04268 overlap by 4 nucleotidesH281DRAFT_04268 and H281DRAFT_04269 overlap by 1 nucleotidesH281DRAFT_04269 and H281DRAFT_04270 are separated by 82 nucleotides H281DRAFT_04266: H281DRAFT_04266 - glutamine amidotransferase, at 384,311 to 385,246 _04266 H281DRAFT_04267: H281DRAFT_04267 - L-glutamate ABC transporter ATP-binding protein /L-aspartate ABC transporter ATP-binding protein, at 385,369 to 386,094 _04267 H281DRAFT_04268: H281DRAFT_04268 - L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein, at 386,091 to 386,768 _04268 H281DRAFT_04269: H281DRAFT_04269 - L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein, at 386,768 to 387,508 _04269 H281DRAFT_04270: H281DRAFT_04270 - L-glutamate-binding protein /L-aspartate-binding protein, at 387,591 to 388,484 _04270 Position (kb) 386 387Strain fitness (log2 ratio) -2 -1 0 1 2at 385.288 kb on - strandat 386.048 kb on - strandat 386.086 kb on - strandat 386.086 kb on - strandat 386.086 kb on - strandat 386.175 kb on + strand, within H281DRAFT_04268at 386.175 kb on + strand, within H281DRAFT_04268at 386.251 kb on + strand, within H281DRAFT_04268at 386.252 kb on - strand, within H281DRAFT_04268at 386.264 kb on + strand, within H281DRAFT_04268at 386.265 kb on - strand, within H281DRAFT_04268at 386.265 kb on - strand, within H281DRAFT_04268at 386.356 kb on + strand, within H281DRAFT_04268at 386.357 kb on - strand, within H281DRAFT_04268at 386.357 kb on - strand, within H281DRAFT_04268at 386.435 kb on - strand, within H281DRAFT_04268at 386.435 kb on - strand, within H281DRAFT_04268at 386.438 kb on - strand, within H281DRAFT_04268at 386.438 kb on - strand, within H281DRAFT_04268at 386.593 kb on + strand, within H281DRAFT_04268at 386.593 kb on + strand, within H281DRAFT_04268at 386.594 kb on - strand, within H281DRAFT_04268at 386.594 kb on - strand, within H281DRAFT_04268at 386.782 kb on + strandat 386.784 kb on + strandat 386.853 kb on + strand, within H281DRAFT_04269at 386.883 kb on + strand, within H281DRAFT_04269at 386.883 kb on + strand, within H281DRAFT_04269at 386.884 kb on - strand, within H281DRAFT_04269at 386.899 kb on - strand, within H281DRAFT_04269at 386.974 kb on + strand, within H281DRAFT_04269at 386.974 kb on + strand, within H281DRAFT_04269at 386.974 kb on + strand, within H281DRAFT_04269at 386.975 kb on - strand, within H281DRAFT_04269at 386.975 kb on - strand, within H281DRAFT_04269at 387.036 kb on + strand, within H281DRAFT_04269at 387.036 kb on + strand, within H281DRAFT_04269at 387.243 kb on - strand, within H281DRAFT_04269at 387.252 kb on + strand, within H281DRAFT_04269at 387.253 kb on - strand, within H281DRAFT_04269at 387.253 kb on - strand, within H281DRAFT_04269at 387.304 kb on - strand, within H281DRAFT_04269at 387.304 kb on - strand, within H281DRAFT_04269at 387.444 kb on + strandat 387.444 kb on + strandat 387.445 kb on - strandat 387.445 kb on - strandat 387.501 kb on + strandat 387.502 kb on - strandat 387.502 kb on - strandat 387.502 kb on - strandat 387.585 kb on + strandat 387.585 kb on + strandat 387.586 kb on - strandat 387.586 kb on - strandat 387.592 kb on + strandat 387.704 kb on - strand, within H281DRAFT_04270at 387.704 kb on - strand, within H281DRAFT_04270

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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385,288 - -1.8
386,048 - +0.3
386,086 - +1.9
386,086 - -0.1
386,086 - +1.8
386,175 + H281DRAFT_04268 0.12 +0.6
386,175 + H281DRAFT_04268 0.12 +0.2
386,251 + H281DRAFT_04268 0.24 +0.5
386,252 - H281DRAFT_04268 0.24 +0.5
386,264 + H281DRAFT_04268 0.26 +0.3
386,265 - H281DRAFT_04268 0.26 +0.5
386,265 - H281DRAFT_04268 0.26 +0.5
386,356 + H281DRAFT_04268 0.39 +0.5
386,357 - H281DRAFT_04268 0.39 +0.3
386,357 - H281DRAFT_04268 0.39 +0.8
386,435 - H281DRAFT_04268 0.51 +0.2
386,435 - H281DRAFT_04268 0.51 +0.2
386,438 - H281DRAFT_04268 0.51 +0.2
386,438 - H281DRAFT_04268 0.51 +0.9
386,593 + H281DRAFT_04268 0.74 +0.7
386,593 + H281DRAFT_04268 0.74 +0.7
386,594 - H281DRAFT_04268 0.74 +0.2
386,594 - H281DRAFT_04268 0.74 +0.1
386,782 + -0.0
386,784 + +1.7
386,853 + H281DRAFT_04269 0.11 -0.0
386,883 + H281DRAFT_04269 0.16 +0.7
386,883 + H281DRAFT_04269 0.16 +0.7
386,884 - H281DRAFT_04269 0.16 +0.2
386,899 - H281DRAFT_04269 0.18 +1.2
386,974 + H281DRAFT_04269 0.28 +2.0
386,974 + H281DRAFT_04269 0.28 +0.5
386,974 + H281DRAFT_04269 0.28 +0.8
386,975 - H281DRAFT_04269 0.28 +0.7
386,975 - H281DRAFT_04269 0.28 +0.7
387,036 + H281DRAFT_04269 0.36 +0.6
387,036 + H281DRAFT_04269 0.36 +0.3
387,243 - H281DRAFT_04269 0.64 -0.1
387,252 + H281DRAFT_04269 0.65 +1.0
387,253 - H281DRAFT_04269 0.65 -0.0
387,253 - H281DRAFT_04269 0.65 +0.1
387,304 - H281DRAFT_04269 0.72 +0.6
387,304 - H281DRAFT_04269 0.72 +0.2
387,444 + +0.3
387,444 + -0.5
387,445 - -0.1
387,445 - +0.1
387,501 + -0.3
387,502 - -0.0
387,502 - +0.4
387,502 - +0.2
387,585 + +0.4
387,585 + +0.6
387,586 - +0.6
387,586 - +0.5
387,592 + +0.4
387,704 - H281DRAFT_04270 0.13 +0.8
387,704 - H281DRAFT_04270 0.13 +0.8

Or see this region's nucleotide sequence