Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04170 and H281DRAFT_04171 are separated by 18 nucleotides H281DRAFT_04171 and H281DRAFT_04172 are separated by 425 nucleotides
H281DRAFT_04170: H281DRAFT_04170 - multidrug efflux pump, at 284,453 to 287,674
_04170
H281DRAFT_04171: H281DRAFT_04171 - membrane fusion protein, multidrug efflux system, at 287,693 to 288,925
_04171
H281DRAFT_04172: H281DRAFT_04172 - transcriptional regulator, TetR family, at 289,351 to 289,989
_04172
Position (kb) 287
288
289 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 286.728 kb on + strand, within H281DRAFT_04170 at 286.951 kb on + strand, within H281DRAFT_04170 at 287.205 kb on + strand, within H281DRAFT_04170 at 287.206 kb on - strand, within H281DRAFT_04170 at 287.206 kb on - strand, within H281DRAFT_04170 at 287.692 kb on - strand at 287.694 kb on + strand at 287.785 kb on + strand at 287.904 kb on + strand, within H281DRAFT_04171 at 287.904 kb on + strand, within H281DRAFT_04171 at 287.904 kb on + strand, within H281DRAFT_04171 at 287.905 kb on - strand, within H281DRAFT_04171 at 288.172 kb on - strand, within H281DRAFT_04171 at 288.175 kb on + strand, within H281DRAFT_04171 at 288.354 kb on + strand, within H281DRAFT_04171 at 288.355 kb on - strand, within H281DRAFT_04171 at 288.508 kb on - strand, within H281DRAFT_04171 at 288.633 kb on + strand, within H281DRAFT_04171 at 288.633 kb on + strand, within H281DRAFT_04171 at 288.654 kb on + strand, within H281DRAFT_04171 at 288.785 kb on + strand, within H281DRAFT_04171 at 288.785 kb on + strand, within H281DRAFT_04171 at 288.786 kb on - strand at 288.786 kb on - strand, within H281DRAFT_04171 at 288.791 kb on - strand, within H281DRAFT_04171 at 288.872 kb on + strand at 288.897 kb on - strand at 288.941 kb on + strand at 288.942 kb on - strand at 289.148 kb on + strand at 289.189 kb on + strand at 289.189 kb on + strand at 289.189 kb on + strand at 289.190 kb on - strand at 289.192 kb on + strand at 289.194 kb on + strand at 289.227 kb on + strand at 289.227 kb on + strand at 289.342 kb on + strand at 289.344 kb on + strand at 289.344 kb on + strand at 289.344 kb on + strand at 289.344 kb on + strand at 289.345 kb on - strand at 289.350 kb on + strand at 289.350 kb on + strand at 289.350 kb on + strand at 289.351 kb on - strand at 289.495 kb on + strand, within H281DRAFT_04172 at 289.772 kb on + strand, within H281DRAFT_04172 at 289.772 kb on + strand, within H281DRAFT_04172 at 289.893 kb on - strand, within H281DRAFT_04172
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 286,728 + H281DRAFT_04170 0.71 +0.5 286,951 + H281DRAFT_04170 0.78 +0.7 287,205 + H281DRAFT_04170 0.85 +0.9 287,206 - H281DRAFT_04170 0.85 +0.5 287,206 - H281DRAFT_04170 0.85 -0.0 287,692 - -0.0 287,694 + +0.3 287,785 + +0.4 287,904 + H281DRAFT_04171 0.17 +0.4 287,904 + H281DRAFT_04171 0.17 +0.8 287,904 + H281DRAFT_04171 0.17 -0.3 287,905 - H281DRAFT_04171 0.17 +0.7 288,172 - H281DRAFT_04171 0.39 +0.3 288,175 + H281DRAFT_04171 0.39 +0.3 288,354 + H281DRAFT_04171 0.54 +0.5 288,355 - H281DRAFT_04171 0.54 +0.6 288,508 - H281DRAFT_04171 0.66 +0.6 288,633 + H281DRAFT_04171 0.76 +1.8 288,633 + H281DRAFT_04171 0.76 +0.4 288,654 + H281DRAFT_04171 0.78 +0.8 288,785 + H281DRAFT_04171 0.89 +0.8 288,785 + H281DRAFT_04171 0.89 -0.3 288,786 - -0.3 288,786 - H281DRAFT_04171 0.89 -0.8 288,791 - H281DRAFT_04171 0.89 +0.4 288,872 + +1.4 288,897 - +1.5 288,941 + +0.2 288,942 - +0.4 289,148 + +0.2 289,189 + +0.3 289,189 + +0.9 289,189 + +0.2 289,190 - +0.2 289,192 + +0.3 289,194 + +0.0 289,227 + +0.4 289,227 + +0.9 289,342 + +0.7 289,344 + +0.6 289,344 + +0.1 289,344 + -0.3 289,344 + +0.4 289,345 - -2.4 289,350 + +0.1 289,350 + -0.8 289,350 + -0.0 289,351 - -1.6 289,495 + H281DRAFT_04172 0.23 -1.0 289,772 + H281DRAFT_04172 0.66 -3.2 289,772 + H281DRAFT_04172 0.66 -2.4 289,893 - H281DRAFT_04172 0.85 -0.4
Or see this region's nucleotide sequence