Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04074

Experiment: Protocatechuic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04073 and H281DRAFT_04074 are separated by 79 nucleotidesH281DRAFT_04074 and H281DRAFT_04075 overlap by 4 nucleotidesH281DRAFT_04075 and H281DRAFT_04076 are separated by 158 nucleotides H281DRAFT_04073: H281DRAFT_04073 - Small-conductance mechanosensitive channel, at 174,648 to 176,021 _04073 H281DRAFT_04074: H281DRAFT_04074 - 16S rRNA (cytosine967-C5)-methyltransferase, at 176,101 to 177,360 _04074 H281DRAFT_04075: H281DRAFT_04075 - formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase, at 177,357 to 177,968 _04075 H281DRAFT_04076: H281DRAFT_04076 - FMN adenylyltransferase /riboflavin kinase, at 178,127 to 179,122 _04076 Position (kb) 176 177 178Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 175.130 kb on + strand, within H281DRAFT_04073at 175.130 kb on + strand, within H281DRAFT_04073at 175.131 kb on - strand, within H281DRAFT_04073at 175.131 kb on - strand, within H281DRAFT_04073at 175.131 kb on - strand, within H281DRAFT_04073at 175.234 kb on + strand, within H281DRAFT_04073at 175.234 kb on + strand, within H281DRAFT_04073at 175.234 kb on + strand, within H281DRAFT_04073at 175.234 kb on + strand, within H281DRAFT_04073at 175.234 kb on + strand, within H281DRAFT_04073at 175.234 kb on + strand, within H281DRAFT_04073at 175.234 kb on + strand, within H281DRAFT_04073at 175.235 kb on - strand, within H281DRAFT_04073at 175.235 kb on - strand, within H281DRAFT_04073at 175.235 kb on - strand, within H281DRAFT_04073at 175.235 kb on - strand, within H281DRAFT_04073at 175.235 kb on - strand, within H281DRAFT_04073at 175.235 kb on - strand, within H281DRAFT_04073at 175.235 kb on - strand, within H281DRAFT_04073at 175.235 kb on - strand, within H281DRAFT_04073at 175.235 kb on - strand, within H281DRAFT_04073at 175.235 kb on - strand, within H281DRAFT_04073at 175.238 kb on + strand, within H281DRAFT_04073at 175.238 kb on + strand, within H281DRAFT_04073at 175.239 kb on - strand, within H281DRAFT_04073at 175.239 kb on - strand, within H281DRAFT_04073at 175.700 kb on - strand, within H281DRAFT_04073at 175.700 kb on - strand, within H281DRAFT_04073at 176.091 kb on + strandat 176.091 kb on + strandat 176.172 kb on - strandat 176.306 kb on + strand, within H281DRAFT_04074at 176.606 kb on + strand, within H281DRAFT_04074at 176.606 kb on + strand, within H281DRAFT_04074at 176.607 kb on - strand, within H281DRAFT_04074at 176.607 kb on - strand, within H281DRAFT_04074at 176.607 kb on - strand, within H281DRAFT_04074at 176.866 kb on + strand, within H281DRAFT_04074at 176.866 kb on + strand, within H281DRAFT_04074at 176.866 kb on + strand, within H281DRAFT_04074at 176.866 kb on + strand, within H281DRAFT_04074at 176.867 kb on - strand, within H281DRAFT_04074at 176.921 kb on + strand, within H281DRAFT_04074at 176.984 kb on + strand, within H281DRAFT_04074at 176.985 kb on - strand, within H281DRAFT_04074at 176.985 kb on - strand, within H281DRAFT_04074at 176.985 kb on - strand, within H281DRAFT_04074at 176.985 kb on - strand, within H281DRAFT_04074at 177.352 kb on + strandat 177.352 kb on + strandat 177.352 kb on + strandat 177.352 kb on + strandat 177.352 kb on + strandat 177.352 kb on + strandat 177.352 kb on + strandat 177.352 kb on + strandat 177.352 kb on + strandat 177.353 kb on - strandat 177.413 kb on + strandat 177.414 kb on - strandat 177.414 kb on - strandat 177.479 kb on - strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.482 kb on + strand, within H281DRAFT_04075at 177.483 kb on - strand, within H281DRAFT_04075at 177.483 kb on - strand, within H281DRAFT_04075at 177.483 kb on - strand, within H281DRAFT_04075at 177.744 kb on - strand, within H281DRAFT_04075at 177.959 kb on + strandat 177.959 kb on + strandat 177.960 kb on - strandat 178.076 kb on + strandat 178.076 kb on + strandat 178.077 kb on - strandat 178.078 kb on + strandat 178.078 kb on + strandat 178.078 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
remove
175,130 + H281DRAFT_04073 0.35 +0.1
175,130 + H281DRAFT_04073 0.35 +0.9
175,131 - H281DRAFT_04073 0.35 -0.1
175,131 - H281DRAFT_04073 0.35 +1.0
175,131 - H281DRAFT_04073 0.35 -0.5
175,234 + H281DRAFT_04073 0.43 -0.3
175,234 + H281DRAFT_04073 0.43 +0.0
175,234 + H281DRAFT_04073 0.43 +0.0
175,234 + H281DRAFT_04073 0.43 -1.1
175,234 + H281DRAFT_04073 0.43 -1.4
175,234 + H281DRAFT_04073 0.43 +0.2
175,234 + H281DRAFT_04073 0.43 -0.1
175,235 - H281DRAFT_04073 0.43 +0.0
175,235 - H281DRAFT_04073 0.43 -0.1
175,235 - H281DRAFT_04073 0.43 -1.2
175,235 - H281DRAFT_04073 0.43 +0.2
175,235 - H281DRAFT_04073 0.43 +0.2
175,235 - H281DRAFT_04073 0.43 -0.4
175,235 - H281DRAFT_04073 0.43 +0.2
175,235 - H281DRAFT_04073 0.43 +0.0
175,235 - H281DRAFT_04073 0.43 +0.6
175,235 - H281DRAFT_04073 0.43 +0.1
175,238 + H281DRAFT_04073 0.43 -0.9
175,238 + H281DRAFT_04073 0.43 -0.1
175,239 - H281DRAFT_04073 0.43 +0.8
175,239 - H281DRAFT_04073 0.43 +0.2
175,700 - H281DRAFT_04073 0.77 +0.1
175,700 - H281DRAFT_04073 0.77 -0.0
176,091 + +1.2
176,091 + +0.6
176,172 - -0.5
176,306 + H281DRAFT_04074 0.16 +0.3
176,606 + H281DRAFT_04074 0.40 +0.8
176,606 + H281DRAFT_04074 0.40 -0.1
176,607 - H281DRAFT_04074 0.40 -0.1
176,607 - H281DRAFT_04074 0.40 -0.6
176,607 - H281DRAFT_04074 0.40 +0.4
176,866 + H281DRAFT_04074 0.61 +0.1
176,866 + H281DRAFT_04074 0.61 +0.4
176,866 + H281DRAFT_04074 0.61 +0.6
176,866 + H281DRAFT_04074 0.61 -0.4
176,867 - H281DRAFT_04074 0.61 +0.4
176,921 + H281DRAFT_04074 0.65 +0.1
176,984 + H281DRAFT_04074 0.70 +0.5
176,985 - H281DRAFT_04074 0.70 +0.7
176,985 - H281DRAFT_04074 0.70 -0.1
176,985 - H281DRAFT_04074 0.70 -0.6
176,985 - H281DRAFT_04074 0.70 +0.2
177,352 + -0.1
177,352 + +0.5
177,352 + -1.0
177,352 + +0.5
177,352 + +0.5
177,352 + -0.2
177,352 + -0.2
177,352 + -1.2
177,352 + -0.1
177,353 - -0.0
177,413 + -0.7
177,414 - -2.0
177,414 - -1.0
177,479 - H281DRAFT_04075 0.20 -0.4
177,482 + H281DRAFT_04075 0.20 -3.1
177,482 + H281DRAFT_04075 0.20 -2.8
177,482 + H281DRAFT_04075 0.20 -3.4
177,482 + H281DRAFT_04075 0.20 -1.6
177,482 + H281DRAFT_04075 0.20 -2.0
177,482 + H281DRAFT_04075 0.20 -3.1
177,482 + H281DRAFT_04075 0.20 -4.1
177,482 + H281DRAFT_04075 0.20 -2.7
177,482 + H281DRAFT_04075 0.20 -2.4
177,482 + H281DRAFT_04075 0.20 -2.7
177,483 - H281DRAFT_04075 0.21 -2.1
177,483 - H281DRAFT_04075 0.21 -2.2
177,483 - H281DRAFT_04075 0.21 -2.0
177,744 - H281DRAFT_04075 0.63 -2.3
177,959 + -2.1
177,959 + -1.7
177,960 - -2.0
178,076 + -0.1
178,076 + +0.8
178,077 - -1.0
178,078 + -0.7
178,078 + +0.1
178,078 + +0.8

Or see this region's nucleotide sequence