Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03895 and H281DRAFT_03896 overlap by 1 nucleotides H281DRAFT_03896 and H281DRAFT_03897 overlap by 4 nucleotides
H281DRAFT_03895: H281DRAFT_03895 - Uncharacterized conserved protein YfaA, DUF2138 family, at 426,521 to 428,323
_03895
H281DRAFT_03896: H281DRAFT_03896 - hypothetical protein, at 428,323 to 429,135
_03896
H281DRAFT_03897: H281DRAFT_03897 - hypothetical protein, at 429,132 to 433,940
_03897
Position (kb) 428
429
430 Strain fitness (log2 ratio) -1
0
1 at 427.563 kb on + strand, within H281DRAFT_03895 at 427.564 kb on - strand, within H281DRAFT_03895 at 427.703 kb on + strand, within H281DRAFT_03895 at 427.704 kb on - strand, within H281DRAFT_03895 at 427.704 kb on - strand, within H281DRAFT_03895 at 427.919 kb on + strand, within H281DRAFT_03895 at 427.919 kb on + strand, within H281DRAFT_03895 at 428.168 kb on + strand at 428.169 kb on - strand at 428.169 kb on - strand at 428.229 kb on + strand at 428.229 kb on + strand at 428.322 kb on - strand at 428.673 kb on - strand, within H281DRAFT_03896 at 428.845 kb on + strand, within H281DRAFT_03896 at 428.978 kb on - strand, within H281DRAFT_03896 at 429.179 kb on + strand at 429.242 kb on - strand at 429.526 kb on + strand at 429.603 kb on + strand at 429.603 kb on + strand at 429.603 kb on + strand at 429.604 kb on - strand at 429.771 kb on + strand, within H281DRAFT_03897 at 429.771 kb on + strand, within H281DRAFT_03897 at 429.772 kb on - strand, within H281DRAFT_03897 at 429.860 kb on + strand, within H281DRAFT_03897 at 429.867 kb on - strand, within H281DRAFT_03897 at 429.924 kb on + strand, within H281DRAFT_03897 at 429.924 kb on + strand, within H281DRAFT_03897 at 429.925 kb on - strand, within H281DRAFT_03897 at 429.925 kb on - strand, within H281DRAFT_03897 at 429.925 kb on - strand, within H281DRAFT_03897 at 429.925 kb on - strand, within H281DRAFT_03897 at 429.925 kb on - strand, within H281DRAFT_03897 at 429.962 kb on + strand, within H281DRAFT_03897 at 429.962 kb on + strand, within H281DRAFT_03897 at 429.963 kb on - strand, within H281DRAFT_03897 at 430.031 kb on + strand, within H281DRAFT_03897 at 430.032 kb on - strand, within H281DRAFT_03897 at 430.062 kb on - strand, within H281DRAFT_03897 at 430.091 kb on - strand, within H281DRAFT_03897
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 427,563 + H281DRAFT_03895 0.58 +0.3 427,564 - H281DRAFT_03895 0.58 +0.2 427,703 + H281DRAFT_03895 0.66 +0.0 427,704 - H281DRAFT_03895 0.66 -0.1 427,704 - H281DRAFT_03895 0.66 +1.1 427,919 + H281DRAFT_03895 0.78 +0.3 427,919 + H281DRAFT_03895 0.78 -0.2 428,168 + -0.1 428,169 - +0.1 428,169 - +0.4 428,229 + -0.1 428,229 + +0.2 428,322 - +0.4 428,673 - H281DRAFT_03896 0.43 +0.4 428,845 + H281DRAFT_03896 0.64 +0.6 428,978 - H281DRAFT_03896 0.81 +0.3 429,179 + -0.9 429,242 - -0.7 429,526 + +0.2 429,603 + -0.6 429,603 + +0.2 429,603 + +0.1 429,604 - -0.7 429,771 + H281DRAFT_03897 0.13 +0.3 429,771 + H281DRAFT_03897 0.13 +0.5 429,772 - H281DRAFT_03897 0.13 +1.0 429,860 + H281DRAFT_03897 0.15 -0.3 429,867 - H281DRAFT_03897 0.15 +0.1 429,924 + H281DRAFT_03897 0.16 +0.6 429,924 + H281DRAFT_03897 0.16 -0.4 429,925 - H281DRAFT_03897 0.16 -0.0 429,925 - H281DRAFT_03897 0.16 -0.4 429,925 - H281DRAFT_03897 0.16 +0.4 429,925 - H281DRAFT_03897 0.16 +0.2 429,925 - H281DRAFT_03897 0.16 +0.3 429,962 + H281DRAFT_03897 0.17 +0.6 429,962 + H281DRAFT_03897 0.17 -0.1 429,963 - H281DRAFT_03897 0.17 -0.4 430,031 + H281DRAFT_03897 0.19 -0.3 430,032 - H281DRAFT_03897 0.19 +0.4 430,062 - H281DRAFT_03897 0.19 -0.8 430,091 - H281DRAFT_03897 0.20 +0.4
Or see this region's nucleotide sequence