Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03878 and H281DRAFT_03879 overlap by 4 nucleotides H281DRAFT_03879 and H281DRAFT_03880 are separated by 244 nucleotides
H281DRAFT_03878: H281DRAFT_03878 - xylose ABC transporter ATP-binding protein, at 407,223 to 408,782
_03878
H281DRAFT_03879: H281DRAFT_03879 - xylose ABC transporter membrane protein, at 408,779 to 409,978
_03879
H281DRAFT_03880: H281DRAFT_03880 - isoquinoline 1-oxidoreductase, beta subunit, at 410,223 to 412,490
_03880
Position (kb) 408
409
410 Strain fitness (log2 ratio) -2
-1
0
1 at 408.037 kb on + strand, within H281DRAFT_03878 at 408.062 kb on - strand, within H281DRAFT_03878 at 408.295 kb on + strand, within H281DRAFT_03878 at 408.315 kb on - strand, within H281DRAFT_03878 at 408.506 kb on - strand, within H281DRAFT_03878 at 408.506 kb on - strand, within H281DRAFT_03878 at 408.793 kb on + strand at 408.872 kb on + strand at 409.190 kb on + strand, within H281DRAFT_03879 at 409.200 kb on + strand, within H281DRAFT_03879 at 409.201 kb on - strand, within H281DRAFT_03879 at 409.319 kb on + strand, within H281DRAFT_03879 at 409.599 kb on - strand, within H281DRAFT_03879 at 409.898 kb on + strand at 410.143 kb on + strand at 410.144 kb on - strand at 410.146 kb on + strand at 410.150 kb on - strand at 410.150 kb on - strand at 410.776 kb on - strand, within H281DRAFT_03880 at 410.798 kb on + strand, within H281DRAFT_03880
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 408,037 + H281DRAFT_03878 0.52 +0.8 408,062 - H281DRAFT_03878 0.54 +0.7 408,295 + H281DRAFT_03878 0.69 +0.7 408,315 - H281DRAFT_03878 0.70 +0.4 408,506 - H281DRAFT_03878 0.82 -1.8 408,506 - H281DRAFT_03878 0.82 +0.0 408,793 + +0.2 408,872 + +1.4 409,190 + H281DRAFT_03879 0.34 +0.7 409,200 + H281DRAFT_03879 0.35 +0.7 409,201 - H281DRAFT_03879 0.35 +0.6 409,319 + H281DRAFT_03879 0.45 +0.2 409,599 - H281DRAFT_03879 0.68 +0.1 409,898 + +1.1 410,143 + -0.2 410,144 - +0.3 410,146 + -0.1 410,150 - -0.2 410,150 - +0.3 410,776 - H281DRAFT_03880 0.24 +0.3 410,798 + H281DRAFT_03880 0.25 +0.7
Or see this region's nucleotide sequence