Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03871 and H281DRAFT_03872 are separated by 44 nucleotides H281DRAFT_03872 and H281DRAFT_03873 are separated by 127 nucleotides H281DRAFT_03873 and H281DRAFT_03874 are separated by 173 nucleotides
H281DRAFT_03871: H281DRAFT_03871 - hypothetical protein, at 399,277 to 400,998
_03871
H281DRAFT_03872: H281DRAFT_03872 - hypothetical protein, at 401,043 to 401,423
_03872
H281DRAFT_03873: H281DRAFT_03873 - protein of unknown function (DUF4148), at 401,551 to 401,844
_03873
H281DRAFT_03874: H281DRAFT_03874 - aldose 1-epimerase (EC 5.1.3.3), at 402,018 to 403,100
_03874
Position (kb) 401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.633 kb on + strand, within H281DRAFT_03871 at 400.648 kb on + strand, within H281DRAFT_03871 at 400.648 kb on + strand, within H281DRAFT_03871 at 400.868 kb on - strand at 400.868 kb on - strand at 400.951 kb on + strand at 400.951 kb on + strand at 400.951 kb on + strand at 400.951 kb on + strand at 400.952 kb on - strand at 400.999 kb on + strand at 401.000 kb on - strand at 401.319 kb on + strand, within H281DRAFT_03872 at 401.319 kb on + strand, within H281DRAFT_03872 at 401.320 kb on - strand, within H281DRAFT_03872 at 401.323 kb on + strand, within H281DRAFT_03872 at 401.324 kb on - strand, within H281DRAFT_03872 at 401.452 kb on + strand at 401.481 kb on + strand at 401.482 kb on - strand at 401.616 kb on + strand, within H281DRAFT_03873 at 401.712 kb on - strand, within H281DRAFT_03873 at 401.949 kb on - strand at 401.949 kb on - strand at 402.340 kb on + strand, within H281DRAFT_03874 at 402.340 kb on + strand, within H281DRAFT_03874 at 402.556 kb on + strand, within H281DRAFT_03874 at 402.556 kb on + strand, within H281DRAFT_03874 at 402.557 kb on - strand, within H281DRAFT_03874 at 402.641 kb on + strand, within H281DRAFT_03874 at 402.644 kb on - strand, within H281DRAFT_03874 at 402.808 kb on + strand, within H281DRAFT_03874 at 402.828 kb on - strand, within H281DRAFT_03874
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 400,633 + H281DRAFT_03871 0.79 +2.5 400,648 + H281DRAFT_03871 0.80 +0.5 400,648 + H281DRAFT_03871 0.80 +0.9 400,868 - -0.1 400,868 - +0.1 400,951 + -1.3 400,951 + -0.1 400,951 + -0.0 400,951 + +0.3 400,952 - +0.3 400,999 + +0.6 401,000 - +0.1 401,319 + H281DRAFT_03872 0.72 +0.7 401,319 + H281DRAFT_03872 0.72 +0.0 401,320 - H281DRAFT_03872 0.73 -1.9 401,323 + H281DRAFT_03872 0.73 -0.3 401,324 - H281DRAFT_03872 0.74 -0.0 401,452 + +0.3 401,481 + +0.4 401,482 - +0.3 401,616 + H281DRAFT_03873 0.22 +0.2 401,712 - H281DRAFT_03873 0.55 +0.7 401,949 - -0.2 401,949 - +0.4 402,340 + H281DRAFT_03874 0.30 +0.4 402,340 + H281DRAFT_03874 0.30 -1.5 402,556 + H281DRAFT_03874 0.50 +0.5 402,556 + H281DRAFT_03874 0.50 +0.7 402,557 - H281DRAFT_03874 0.50 -0.5 402,641 + H281DRAFT_03874 0.58 +0.3 402,644 - H281DRAFT_03874 0.58 -0.0 402,808 + H281DRAFT_03874 0.73 +0.2 402,828 - H281DRAFT_03874 0.75 -0.4
Or see this region's nucleotide sequence