Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03634

Experiment: Protocatechuic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_03633 and H281DRAFT_03634 are separated by 439 nucleotidesH281DRAFT_03634 and H281DRAFT_03635 are separated by 1 nucleotidesH281DRAFT_03635 and H281DRAFT_03636 are separated by 49 nucleotides H281DRAFT_03633: H281DRAFT_03633 - Outer membrane protein (porin), at 142,690 to 143,763 _03633 H281DRAFT_03634: H281DRAFT_03634 - 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit, at 144,203 to 144,517 _03634 H281DRAFT_03635: H281DRAFT_03635 - hypothetical protein, at 144,519 to 144,830 _03635 H281DRAFT_03636: H281DRAFT_03636 - Phenylpropionate dioxygenase, large terminal subunit, at 144,880 to 145,983 _03636 Position (kb) 144 145Strain fitness (log2 ratio) -1 0 1at 143.376 kb on - strand, within H281DRAFT_03633at 143.523 kb on - strand, within H281DRAFT_03633at 143.575 kb on + strand, within H281DRAFT_03633at 143.576 kb on - strand, within H281DRAFT_03633at 143.657 kb on + strandat 143.657 kb on + strandat 143.657 kb on + strandat 143.658 kb on - strandat 143.957 kb on - strandat 143.992 kb on - strandat 144.016 kb on + strandat 144.083 kb on + strandat 144.084 kb on - strandat 144.084 kb on - strandat 144.296 kb on + strand, within H281DRAFT_03634at 144.296 kb on + strand, within H281DRAFT_03634at 144.412 kb on - strand, within H281DRAFT_03634at 144.470 kb on + strand, within H281DRAFT_03634at 144.633 kb on - strand, within H281DRAFT_03635at 144.829 kb on - strandat 144.928 kb on + strandat 144.952 kb on + strandat 144.953 kb on - strandat 144.953 kb on - strandat 144.958 kb on + strandat 145.336 kb on + strand, within H281DRAFT_03636at 145.381 kb on + strand, within H281DRAFT_03636

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
remove
143,376 - H281DRAFT_03633 0.64 +0.3
143,523 - H281DRAFT_03633 0.78 +0.3
143,575 + H281DRAFT_03633 0.82 -0.8
143,576 - H281DRAFT_03633 0.82 -0.5
143,657 + -0.5
143,657 + -0.1
143,657 + +0.1
143,658 - +0.3
143,957 - -0.2
143,992 - +0.0
144,016 + +1.1
144,083 + +0.2
144,084 - -0.3
144,084 - -0.1
144,296 + H281DRAFT_03634 0.30 +1.4
144,296 + H281DRAFT_03634 0.30 +0.2
144,412 - H281DRAFT_03634 0.66 +0.6
144,470 + H281DRAFT_03634 0.85 -0.6
144,633 - H281DRAFT_03635 0.37 +0.2
144,829 - -0.3
144,928 + +0.2
144,952 + -0.5
144,953 - +0.1
144,953 - +1.1
144,958 + +0.3
145,336 + H281DRAFT_03636 0.41 -0.3
145,381 + H281DRAFT_03636 0.45 +0.2

Or see this region's nucleotide sequence