Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03035 and H281DRAFT_03036 are separated by 131 nucleotides H281DRAFT_03036 and H281DRAFT_03037 are separated by 23 nucleotides H281DRAFT_03037 and H281DRAFT_03038 are separated by 48 nucleotides
H281DRAFT_03035: H281DRAFT_03035 - hydroxybutyrate-dimer hydrolase, at 64,865 to 66,964
_03035
H281DRAFT_03036: H281DRAFT_03036 - hypothetical protein, at 67,096 to 67,338
_03036
H281DRAFT_03037: H281DRAFT_03037 - Exodeoxyribonuclease III (EC 3.1.11.2), at 67,362 to 68,171
_03037
H281DRAFT_03038: H281DRAFT_03038 - chemotaxis protein MotB, at 68,220 to 69,206
_03038
Position (kb) 67
68 Strain fitness (log2 ratio) -1
0
1 at 66.170 kb on + strand, within H281DRAFT_03035 at 66.254 kb on + strand, within H281DRAFT_03035 at 66.255 kb on - strand, within H281DRAFT_03035 at 66.410 kb on + strand, within H281DRAFT_03035 at 66.490 kb on + strand, within H281DRAFT_03035 at 66.490 kb on + strand, within H281DRAFT_03035 at 66.491 kb on - strand, within H281DRAFT_03035 at 66.756 kb on - strand at 66.758 kb on + strand at 66.835 kb on + strand at 66.835 kb on + strand at 66.836 kb on - strand at 67.024 kb on + strand at 67.057 kb on + strand at 67.057 kb on + strand at 67.109 kb on - strand at 67.160 kb on - strand, within H281DRAFT_03036 at 67.686 kb on + strand, within H281DRAFT_03037 at 67.728 kb on + strand, within H281DRAFT_03037 at 67.729 kb on - strand, within H281DRAFT_03037 at 67.842 kb on + strand, within H281DRAFT_03037 at 67.842 kb on + strand, within H281DRAFT_03037 at 67.842 kb on + strand, within H281DRAFT_03037 at 67.843 kb on - strand, within H281DRAFT_03037 at 67.966 kb on - strand, within H281DRAFT_03037 at 67.967 kb on + strand, within H281DRAFT_03037 at 67.967 kb on + strand, within H281DRAFT_03037 at 67.967 kb on + strand, within H281DRAFT_03037 at 67.980 kb on + strand, within H281DRAFT_03037 at 68.028 kb on - strand, within H281DRAFT_03037 at 68.229 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 66,170 + H281DRAFT_03035 0.62 -0.2 66,254 + H281DRAFT_03035 0.66 +0.3 66,255 - H281DRAFT_03035 0.66 +0.0 66,410 + H281DRAFT_03035 0.74 +0.5 66,490 + H281DRAFT_03035 0.77 +0.7 66,490 + H281DRAFT_03035 0.77 +0.1 66,491 - H281DRAFT_03035 0.77 -0.1 66,756 - -0.3 66,758 + -0.4 66,835 + +0.2 66,835 + +0.4 66,836 - +1.1 67,024 + +0.0 67,057 + +0.2 67,057 + +0.1 67,109 - -0.0 67,160 - H281DRAFT_03036 0.26 +0.5 67,686 + H281DRAFT_03037 0.40 +0.2 67,728 + H281DRAFT_03037 0.45 +0.3 67,729 - H281DRAFT_03037 0.45 -0.7 67,842 + H281DRAFT_03037 0.59 +0.2 67,842 + H281DRAFT_03037 0.59 -0.5 67,842 + H281DRAFT_03037 0.59 -0.9 67,843 - H281DRAFT_03037 0.59 +0.1 67,966 - H281DRAFT_03037 0.75 -0.7 67,967 + H281DRAFT_03037 0.75 -0.2 67,967 + H281DRAFT_03037 0.75 -0.0 67,967 + H281DRAFT_03037 0.75 +0.4 67,980 + H281DRAFT_03037 0.76 +0.0 68,028 - H281DRAFT_03037 0.82 +0.3 68,229 + -0.3
Or see this region's nucleotide sequence