Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02900 and H281DRAFT_02901 are separated by 26 nucleotides H281DRAFT_02901 and H281DRAFT_02902 overlap by 4 nucleotides
H281DRAFT_02900: H281DRAFT_02900 - Small-conductance mechanosensitive channel, at 504,753 to 507,464
_02900
H281DRAFT_02901: H281DRAFT_02901 - DNA excision repair protein ERCC-2, at 507,491 to 509,755
_02901
H281DRAFT_02902: H281DRAFT_02902 - VRR-NUC domain-containing protein, at 509,752 to 511,575
_02902
Position (kb) 507
508
509
510 Strain fitness (log2 ratio) -1
0
1 at 506.696 kb on + strand, within H281DRAFT_02900 at 506.958 kb on - strand, within H281DRAFT_02900 at 507.544 kb on - strand at 507.640 kb on - strand at 507.645 kb on + strand at 507.646 kb on - strand at 507.646 kb on - strand at 507.651 kb on + strand at 508.139 kb on - strand, within H281DRAFT_02901 at 508.473 kb on + strand, within H281DRAFT_02901 at 508.483 kb on - strand, within H281DRAFT_02901 at 508.608 kb on + strand, within H281DRAFT_02901 at 508.609 kb on - strand, within H281DRAFT_02901 at 508.717 kb on - strand, within H281DRAFT_02901 at 508.720 kb on - strand, within H281DRAFT_02901 at 508.875 kb on + strand, within H281DRAFT_02901 at 508.876 kb on - strand, within H281DRAFT_02901 at 509.153 kb on - strand, within H281DRAFT_02901 at 509.355 kb on - strand, within H281DRAFT_02901 at 509.509 kb on - strand, within H281DRAFT_02901 at 509.748 kb on + strand at 509.886 kb on - strand at 509.890 kb on + strand at 510.224 kb on + strand, within H281DRAFT_02902 at 510.398 kb on + strand, within H281DRAFT_02902 at 510.398 kb on + strand, within H281DRAFT_02902 at 510.445 kb on - strand, within H281DRAFT_02902 at 510.619 kb on + strand, within H281DRAFT_02902
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 506,696 + H281DRAFT_02900 0.72 +0.1 506,958 - H281DRAFT_02900 0.81 -0.3 507,544 - -0.2 507,640 - -0.1 507,645 + -0.6 507,646 - -0.3 507,646 - -0.1 507,651 + +0.0 508,139 - H281DRAFT_02901 0.29 -0.2 508,473 + H281DRAFT_02901 0.43 +0.3 508,483 - H281DRAFT_02901 0.44 +0.2 508,608 + H281DRAFT_02901 0.49 -0.6 508,609 - H281DRAFT_02901 0.49 +0.3 508,717 - H281DRAFT_02901 0.54 +0.3 508,720 - H281DRAFT_02901 0.54 -1.0 508,875 + H281DRAFT_02901 0.61 +0.1 508,876 - H281DRAFT_02901 0.61 -1.0 509,153 - H281DRAFT_02901 0.73 +0.4 509,355 - H281DRAFT_02901 0.82 -0.7 509,509 - H281DRAFT_02901 0.89 -0.9 509,748 + -0.0 509,886 - +0.1 509,890 + -0.2 510,224 + H281DRAFT_02902 0.26 -0.3 510,398 + H281DRAFT_02902 0.35 +0.0 510,398 + H281DRAFT_02902 0.35 +0.5 510,445 - H281DRAFT_02902 0.38 +1.4 510,619 + H281DRAFT_02902 0.48 +0.9
Or see this region's nucleotide sequence