Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02450 and H281DRAFT_02451 overlap by 8 nucleotides H281DRAFT_02451 and H281DRAFT_02452 are separated by 7 nucleotides H281DRAFT_02452 and H281DRAFT_02453 are separated by 119 nucleotides
H281DRAFT_02450: H281DRAFT_02450 - glycine betaine/proline transport system ATP-binding protein, at 14,739 to 15,920
_02450
H281DRAFT_02451: H281DRAFT_02451 - glycine betaine/proline transport system permease protein, at 15,913 to 16,815
_02451
H281DRAFT_02452: H281DRAFT_02452 - transcriptional regulator, AraC family with amidase-like domain, at 16,823 to 17,821
_02452
H281DRAFT_02453: H281DRAFT_02453 - glycine betaine/proline transport system substrate-binding protein, at 17,941 to 18,885
_02453
Position (kb) 16
17
18 Strain fitness (log2 ratio) -1
0
1 at 16.089 kb on - strand, within H281DRAFT_02451 at 16.325 kb on - strand, within H281DRAFT_02451 at 16.341 kb on + strand, within H281DRAFT_02451 at 16.342 kb on - strand, within H281DRAFT_02451 at 16.964 kb on + strand, within H281DRAFT_02452 at 16.985 kb on + strand, within H281DRAFT_02452 at 17.038 kb on + strand, within H281DRAFT_02452 at 17.041 kb on + strand, within H281DRAFT_02452 at 17.123 kb on + strand, within H281DRAFT_02452 at 17.263 kb on + strand, within H281DRAFT_02452 at 17.264 kb on - strand, within H281DRAFT_02452 at 17.286 kb on - strand, within H281DRAFT_02452 at 17.465 kb on + strand, within H281DRAFT_02452 at 17.638 kb on - strand, within H281DRAFT_02452 at 17.652 kb on - strand, within H281DRAFT_02452 at 17.652 kb on - strand, within H281DRAFT_02452 at 17.654 kb on + strand, within H281DRAFT_02452 at 17.901 kb on - strand at 17.901 kb on - strand at 18.144 kb on + strand, within H281DRAFT_02453 at 18.179 kb on + strand, within H281DRAFT_02453 at 18.179 kb on + strand, within H281DRAFT_02453 at 18.179 kb on + strand, within H281DRAFT_02453 at 18.180 kb on - strand, within H281DRAFT_02453 at 18.180 kb on - strand, within H281DRAFT_02453 at 18.180 kb on - strand, within H281DRAFT_02453 at 18.284 kb on - strand, within H281DRAFT_02453 at 18.304 kb on + strand, within H281DRAFT_02453 at 18.304 kb on + strand, within H281DRAFT_02453 at 18.353 kb on - strand, within H281DRAFT_02453 at 18.376 kb on + strand, within H281DRAFT_02453 at 18.377 kb on - strand, within H281DRAFT_02453 at 18.439 kb on + strand, within H281DRAFT_02453
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 16,089 - H281DRAFT_02451 0.19 -0.8 16,325 - H281DRAFT_02451 0.46 -0.2 16,341 + H281DRAFT_02451 0.47 +0.1 16,342 - H281DRAFT_02451 0.48 -0.3 16,964 + H281DRAFT_02452 0.14 -0.3 16,985 + H281DRAFT_02452 0.16 -0.4 17,038 + H281DRAFT_02452 0.22 +0.1 17,041 + H281DRAFT_02452 0.22 -0.4 17,123 + H281DRAFT_02452 0.30 +0.1 17,263 + H281DRAFT_02452 0.44 -0.7 17,264 - H281DRAFT_02452 0.44 +0.5 17,286 - H281DRAFT_02452 0.46 -0.5 17,465 + H281DRAFT_02452 0.64 -0.7 17,638 - H281DRAFT_02452 0.82 +0.3 17,652 - H281DRAFT_02452 0.83 -1.3 17,652 - H281DRAFT_02452 0.83 -0.1 17,654 + H281DRAFT_02452 0.83 +0.1 17,901 - +0.1 17,901 - +1.0 18,144 + H281DRAFT_02453 0.21 -0.4 18,179 + H281DRAFT_02453 0.25 +0.4 18,179 + H281DRAFT_02453 0.25 -0.7 18,179 + H281DRAFT_02453 0.25 -0.3 18,180 - H281DRAFT_02453 0.25 -0.1 18,180 - H281DRAFT_02453 0.25 +0.3 18,180 - H281DRAFT_02453 0.25 +1.0 18,284 - H281DRAFT_02453 0.36 -0.9 18,304 + H281DRAFT_02453 0.38 +0.2 18,304 + H281DRAFT_02453 0.38 +0.5 18,353 - H281DRAFT_02453 0.44 +0.2 18,376 + H281DRAFT_02453 0.46 +0.1 18,377 - H281DRAFT_02453 0.46 -0.2 18,439 + H281DRAFT_02453 0.53 +0.1
Or see this region's nucleotide sequence