Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01927 and H281DRAFT_01928 are separated by 171 nucleotides H281DRAFT_01928 and H281DRAFT_01929 are separated by 326 nucleotides H281DRAFT_01929 and H281DRAFT_01930 are separated by 139 nucleotides
H281DRAFT_01927: H281DRAFT_01927 - RNA polymerase, sigma 54 subunit, RpoN/SigL, at 44,133 to 45,647
_01927
H281DRAFT_01928: H281DRAFT_01928 - sigma 54 modulation protein /SSU ribosomal protein S30P, at 45,819 to 46,175
_01928
H281DRAFT_01929: H281DRAFT_01929 - PTS IIA-like nitrogen-regulatory protein PtsN, at 46,502 to 47,017
_01929
H281DRAFT_01930: H281DRAFT_01930 - Hpr(Ser) kinase/phosphatase, at 47,157 to 48,125
_01930
Position (kb) 45
46
47 Strain fitness (log2 ratio) -2
-1
0
1 at 44.827 kb on + strand, within H281DRAFT_01927 at 44.827 kb on + strand, within H281DRAFT_01927 at 44.827 kb on + strand, within H281DRAFT_01927 at 44.828 kb on - strand, within H281DRAFT_01927 at 44.883 kb on + strand, within H281DRAFT_01927 at 44.883 kb on + strand, within H281DRAFT_01927 at 45.007 kb on - strand, within H281DRAFT_01927 at 45.027 kb on + strand, within H281DRAFT_01927 at 45.028 kb on - strand, within H281DRAFT_01927 at 45.123 kb on + strand, within H281DRAFT_01927 at 45.124 kb on - strand, within H281DRAFT_01927 at 45.124 kb on - strand, within H281DRAFT_01927 at 45.131 kb on + strand, within H281DRAFT_01927 at 45.131 kb on + strand, within H281DRAFT_01927 at 45.132 kb on - strand, within H281DRAFT_01927 at 45.132 kb on - strand, within H281DRAFT_01927 at 45.213 kb on - strand, within H281DRAFT_01927 at 45.213 kb on - strand, within H281DRAFT_01927 at 45.213 kb on - strand, within H281DRAFT_01927 at 45.299 kb on + strand, within H281DRAFT_01927 at 45.299 kb on + strand, within H281DRAFT_01927 at 45.300 kb on - strand, within H281DRAFT_01927 at 45.332 kb on + strand, within H281DRAFT_01927 at 45.332 kb on + strand, within H281DRAFT_01927 at 45.333 kb on - strand, within H281DRAFT_01927 at 45.333 kb on - strand, within H281DRAFT_01927 at 45.381 kb on + strand, within H281DRAFT_01927 at 45.381 kb on + strand, within H281DRAFT_01927 at 45.381 kb on + strand, within H281DRAFT_01927 at 45.381 kb on + strand, within H281DRAFT_01927 at 45.382 kb on - strand, within H281DRAFT_01927 at 45.382 kb on - strand, within H281DRAFT_01927 at 45.382 kb on - strand, within H281DRAFT_01927 at 45.417 kb on + strand, within H281DRAFT_01927 at 45.418 kb on - strand, within H281DRAFT_01927 at 45.418 kb on - strand, within H281DRAFT_01927 at 45.499 kb on + strand at 45.499 kb on + strand at 45.500 kb on - strand at 45.774 kb on + strand at 45.774 kb on + strand at 45.774 kb on + strand at 45.775 kb on - strand at 45.775 kb on - strand at 45.775 kb on - strand at 45.775 kb on - strand at 45.775 kb on - strand at 45.802 kb on + strand at 45.818 kb on + strand at 45.818 kb on + strand at 45.818 kb on + strand at 45.819 kb on - strand at 45.853 kb on + strand at 45.854 kb on - strand at 45.893 kb on + strand, within H281DRAFT_01928 at 45.901 kb on + strand, within H281DRAFT_01928 at 45.902 kb on - strand, within H281DRAFT_01928 at 46.044 kb on + strand, within H281DRAFT_01928 at 46.044 kb on + strand, within H281DRAFT_01928 at 46.045 kb on - strand, within H281DRAFT_01928 at 46.090 kb on + strand, within H281DRAFT_01928 at 46.090 kb on + strand, within H281DRAFT_01928 at 46.090 kb on + strand, within H281DRAFT_01928 at 46.090 kb on + strand at 46.091 kb on - strand, within H281DRAFT_01928 at 46.138 kb on - strand, within H281DRAFT_01928 at 46.138 kb on - strand, within H281DRAFT_01928 at 46.183 kb on + strand at 46.183 kb on + strand at 46.184 kb on - strand at 46.193 kb on - strand at 46.354 kb on + strand at 46.354 kb on + strand at 46.355 kb on - strand at 46.355 kb on - strand at 46.382 kb on + strand at 46.400 kb on + strand at 46.400 kb on + strand at 46.400 kb on + strand at 46.400 kb on + strand at 46.400 kb on + strand at 46.401 kb on - strand at 46.401 kb on - strand at 46.401 kb on - strand at 46.401 kb on - strand at 46.401 kb on - strand at 46.402 kb on + strand at 46.402 kb on + strand at 46.402 kb on + strand at 46.402 kb on + strand at 46.427 kb on + strand at 46.455 kb on + strand at 46.455 kb on + strand at 46.455 kb on + strand at 47.077 kb on + strand at 47.077 kb on + strand at 47.077 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 44,827 + H281DRAFT_01927 0.46 -0.6 44,827 + H281DRAFT_01927 0.46 -1.8 44,827 + H281DRAFT_01927 0.46 -1.3 44,828 - H281DRAFT_01927 0.46 -1.0 44,883 + H281DRAFT_01927 0.50 -0.0 44,883 + H281DRAFT_01927 0.50 -0.4 45,007 - H281DRAFT_01927 0.58 -1.9 45,027 + H281DRAFT_01927 0.59 -1.0 45,028 - H281DRAFT_01927 0.59 -1.2 45,123 + H281DRAFT_01927 0.65 -1.1 45,124 - H281DRAFT_01927 0.65 -2.0 45,124 - H281DRAFT_01927 0.65 -0.4 45,131 + H281DRAFT_01927 0.66 -0.9 45,131 + H281DRAFT_01927 0.66 -1.9 45,132 - H281DRAFT_01927 0.66 -1.1 45,132 - H281DRAFT_01927 0.66 -1.2 45,213 - H281DRAFT_01927 0.71 -2.3 45,213 - H281DRAFT_01927 0.71 -1.1 45,213 - H281DRAFT_01927 0.71 -1.0 45,299 + H281DRAFT_01927 0.77 -1.3 45,299 + H281DRAFT_01927 0.77 -2.7 45,300 - H281DRAFT_01927 0.77 +0.0 45,332 + H281DRAFT_01927 0.79 -1.4 45,332 + H281DRAFT_01927 0.79 -1.2 45,333 - H281DRAFT_01927 0.79 -1.3 45,333 - H281DRAFT_01927 0.79 -1.1 45,381 + H281DRAFT_01927 0.82 -1.1 45,381 + H281DRAFT_01927 0.82 -1.6 45,381 + H281DRAFT_01927 0.82 -2.4 45,381 + H281DRAFT_01927 0.82 -1.2 45,382 - H281DRAFT_01927 0.82 -1.1 45,382 - H281DRAFT_01927 0.82 -2.4 45,382 - H281DRAFT_01927 0.82 -0.9 45,417 + H281DRAFT_01927 0.85 -0.2 45,418 - H281DRAFT_01927 0.85 -0.9 45,418 - H281DRAFT_01927 0.85 -1.4 45,499 + -1.7 45,499 + -1.2 45,500 - -1.8 45,774 + +0.2 45,774 + +0.3 45,774 + -2.3 45,775 - +0.7 45,775 - -0.1 45,775 - +0.4 45,775 - +0.2 45,775 - +0.3 45,802 + +1.2 45,818 + -0.5 45,818 + -0.8 45,818 + -0.1 45,819 - +0.7 45,853 + +0.5 45,854 - +0.2 45,893 + H281DRAFT_01928 0.21 +0.2 45,901 + H281DRAFT_01928 0.23 +0.2 45,902 - H281DRAFT_01928 0.23 +0.6 46,044 + H281DRAFT_01928 0.63 +0.2 46,044 + H281DRAFT_01928 0.63 -0.6 46,045 - H281DRAFT_01928 0.63 +0.7 46,090 + H281DRAFT_01928 0.76 +0.9 46,090 + H281DRAFT_01928 0.76 -0.2 46,090 + H281DRAFT_01928 0.76 +0.5 46,090 + -0.3 46,091 - H281DRAFT_01928 0.76 -1.7 46,138 - H281DRAFT_01928 0.89 +0.2 46,138 - H281DRAFT_01928 0.89 +1.1 46,183 + -0.3 46,183 + +0.3 46,184 - +0.2 46,193 - +0.1 46,354 + -0.7 46,354 + +0.2 46,355 - -0.5 46,355 - +0.3 46,382 + -0.2 46,400 + +0.6 46,400 + +0.3 46,400 + -0.3 46,400 + +0.4 46,400 + -0.8 46,401 - -0.3 46,401 - -0.7 46,401 - -0.2 46,401 - -0.6 46,401 - -0.9 46,402 + +0.6 46,402 + -0.8 46,402 + -0.7 46,402 + -0.3 46,427 + +0.4 46,455 + -0.4 46,455 + +0.1 46,455 + -0.4 47,077 + -0.1 47,077 + -1.1 47,077 + +0.2
Or see this region's nucleotide sequence