Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01365 and H281DRAFT_01366 are separated by 46 nucleotides H281DRAFT_01366 and H281DRAFT_01367 are separated by 239 nucleotides
H281DRAFT_01365: H281DRAFT_01365 - transcriptional regulator, LysR family, at 208,507 to 209,436
_01365
H281DRAFT_01366: H281DRAFT_01366 - hypothetical protein, at 209,483 to 209,794
_01366
H281DRAFT_01367: H281DRAFT_01367 - Protein of unknown function (DUF2891), at 210,034 to 211,044
_01367
Position (kb) 209
210 Strain fitness (log2 ratio) -1
0
1
2
3 at 208.575 kb on + strand at 208.898 kb on - strand, within H281DRAFT_01365 at 209.020 kb on - strand, within H281DRAFT_01365 at 209.286 kb on + strand, within H281DRAFT_01365 at 209.331 kb on + strand, within H281DRAFT_01365 at 209.331 kb on + strand, within H281DRAFT_01365 at 209.352 kb on + strand at 209.352 kb on + strand at 209.352 kb on + strand at 209.353 kb on - strand at 209.353 kb on - strand at 209.353 kb on - strand at 209.460 kb on - strand at 209.471 kb on + strand at 209.472 kb on - strand at 209.477 kb on - strand at 209.492 kb on - strand at 209.533 kb on + strand, within H281DRAFT_01366 at 209.744 kb on - strand, within H281DRAFT_01366 at 209.972 kb on + strand at 209.993 kb on + strand at 209.996 kb on + strand at 209.997 kb on - strand at 209.999 kb on + strand at 210.011 kb on - strand at 210.190 kb on + strand, within H281DRAFT_01367 at 210.370 kb on + strand, within H281DRAFT_01367 at 210.407 kb on + strand, within H281DRAFT_01367
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 208,575 + +3.6 208,898 - H281DRAFT_01365 0.42 -0.3 209,020 - H281DRAFT_01365 0.55 -0.3 209,286 + H281DRAFT_01365 0.84 -0.9 209,331 + H281DRAFT_01365 0.89 +0.3 209,331 + H281DRAFT_01365 0.89 +0.5 209,352 + -0.4 209,352 + -0.1 209,352 + +0.0 209,353 - +0.0 209,353 - -0.2 209,353 - +0.1 209,460 - -0.1 209,471 + +0.2 209,472 - +0.4 209,477 - -0.5 209,492 - +0.1 209,533 + H281DRAFT_01366 0.16 -1.1 209,744 - H281DRAFT_01366 0.84 -0.4 209,972 + -0.1 209,993 + +0.5 209,996 + +0.1 209,997 - +0.2 209,999 + +0.2 210,011 - +0.7 210,190 + H281DRAFT_01367 0.15 +0.5 210,370 + H281DRAFT_01367 0.33 +1.0 210,407 + H281DRAFT_01367 0.37 +0.0
Or see this region's nucleotide sequence