Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01232 and H281DRAFT_01233 are separated by 365 nucleotides H281DRAFT_01233 and H281DRAFT_01234 are separated by 58 nucleotides H281DRAFT_01234 and H281DRAFT_01235 are separated by 619 nucleotides H281DRAFT_01235 and H281DRAFT_01236 are separated by 28 nucleotides
H281DRAFT_01232: H281DRAFT_01232 - Predicted arabinose efflux permease, MFS family, at 70,094 to 71,356
_01232
H281DRAFT_01233: H281DRAFT_01233 - hypothetical protein, at 71,722 to 71,994
_01233
H281DRAFT_01234: H281DRAFT_01234 - hypothetical protein, at 72,053 to 72,361
_01234
H281DRAFT_01235: H281DRAFT_01235 - DNA-binding protein H-NS, at 72,981 to 73,307
_01235
H281DRAFT_01236: H281DRAFT_01236 - Protein-tyrosine-phosphatase, at 73,336 to 73,845
_01236
Position (kb) 72
73 Strain fitness (log2 ratio) -1
0
1 at 71.058 kb on - strand, within H281DRAFT_01232 at 71.162 kb on + strand, within H281DRAFT_01232 at 71.341 kb on + strand at 71.351 kb on + strand at 71.352 kb on - strand at 71.356 kb on + strand at 71.356 kb on + strand at 71.356 kb on + strand at 71.357 kb on - strand at 71.357 kb on - strand at 71.360 kb on - strand at 71.411 kb on + strand at 71.412 kb on - strand at 71.442 kb on + strand at 71.468 kb on + strand at 71.530 kb on + strand at 71.531 kb on - strand at 71.542 kb on - strand at 71.687 kb on + strand at 71.804 kb on + strand, within H281DRAFT_01233 at 71.835 kb on + strand, within H281DRAFT_01233 at 71.835 kb on + strand, within H281DRAFT_01233 at 71.836 kb on - strand, within H281DRAFT_01233 at 71.836 kb on - strand, within H281DRAFT_01233 at 71.836 kb on - strand, within H281DRAFT_01233 at 71.836 kb on - strand, within H281DRAFT_01233 at 72.042 kb on + strand at 72.100 kb on + strand, within H281DRAFT_01234 at 72.101 kb on - strand, within H281DRAFT_01234 at 72.148 kb on - strand, within H281DRAFT_01234 at 72.191 kb on + strand, within H281DRAFT_01234 at 72.191 kb on + strand, within H281DRAFT_01234 at 72.191 kb on + strand, within H281DRAFT_01234 at 72.192 kb on - strand, within H281DRAFT_01234 at 72.192 kb on - strand, within H281DRAFT_01234 at 72.409 kb on - strand at 72.463 kb on - strand at 72.608 kb on - strand at 72.608 kb on - strand at 72.608 kb on - strand at 72.608 kb on - strand at 72.610 kb on - strand at 72.658 kb on + strand at 72.659 kb on - strand at 72.659 kb on - strand at 72.714 kb on + strand at 72.715 kb on - strand at 72.715 kb on - strand at 72.748 kb on - strand at 72.761 kb on - strand at 72.796 kb on + strand at 72.872 kb on + strand at 72.872 kb on + strand at 72.899 kb on - strand at 72.964 kb on - strand at 72.964 kb on - strand at 72.973 kb on - strand at 72.976 kb on - strand at 73.002 kb on - strand at 73.002 kb on - strand at 73.072 kb on + strand, within H281DRAFT_01235 at 73.072 kb on + strand, within H281DRAFT_01235 at 73.072 kb on + strand at 73.073 kb on - strand, within H281DRAFT_01235 at 73.073 kb on - strand, within H281DRAFT_01235 at 73.330 kb on + strand at 73.330 kb on + strand at 73.330 kb on + strand at 73.331 kb on - strand at 73.332 kb on + strand at 73.332 kb on + strand at 73.332 kb on + strand at 73.332 kb on + strand at 73.333 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 71,058 - H281DRAFT_01232 0.76 -0.5 71,162 + H281DRAFT_01232 0.85 -0.2 71,341 + +0.1 71,351 + -1.3 71,352 - +0.5 71,356 + +0.5 71,356 + +0.2 71,356 + +0.0 71,357 - +0.7 71,357 - +0.1 71,360 - -0.0 71,411 + -1.1 71,412 - +0.5 71,442 + -0.1 71,468 + +1.5 71,530 + -0.8 71,531 - -0.6 71,542 - +0.5 71,687 + -0.7 71,804 + H281DRAFT_01233 0.30 +0.4 71,835 + H281DRAFT_01233 0.41 -0.1 71,835 + H281DRAFT_01233 0.41 +0.5 71,836 - H281DRAFT_01233 0.42 -1.0 71,836 - H281DRAFT_01233 0.42 +0.4 71,836 - H281DRAFT_01233 0.42 -0.5 71,836 - H281DRAFT_01233 0.42 -0.7 72,042 + +0.4 72,100 + H281DRAFT_01234 0.15 +0.5 72,101 - H281DRAFT_01234 0.16 +0.2 72,148 - H281DRAFT_01234 0.31 +1.3 72,191 + H281DRAFT_01234 0.45 +0.3 72,191 + H281DRAFT_01234 0.45 +0.3 72,191 + H281DRAFT_01234 0.45 +0.6 72,192 - H281DRAFT_01234 0.45 +0.4 72,192 - H281DRAFT_01234 0.45 +0.1 72,409 - -0.2 72,463 - -1.2 72,608 - +0.3 72,608 - -0.2 72,608 - -0.8 72,608 - +0.6 72,610 - -0.2 72,658 + +0.6 72,659 - -0.5 72,659 - -0.2 72,714 + +0.1 72,715 - +0.3 72,715 - -0.6 72,748 - -0.5 72,761 - -0.7 72,796 + +0.0 72,872 + -0.1 72,872 + +0.5 72,899 - -1.1 72,964 - -0.0 72,964 - +0.7 72,973 - -0.2 72,976 - -0.3 73,002 - -0.2 73,002 - -1.0 73,072 + H281DRAFT_01235 0.28 +1.5 73,072 + H281DRAFT_01235 0.28 -1.1 73,072 + -1.5 73,073 - H281DRAFT_01235 0.28 +0.2 73,073 - H281DRAFT_01235 0.28 -0.4 73,330 + -0.2 73,330 + -0.3 73,330 + +0.6 73,331 - -0.1 73,332 + +0.1 73,332 + +0.6 73,332 + -0.2 73,332 + +0.7 73,333 - -0.7
Or see this region's nucleotide sequence