Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01069 and H281DRAFT_01070 are separated by 336 nucleotides H281DRAFT_01070 and H281DRAFT_01071 are separated by 37 nucleotides H281DRAFT_01071 and H281DRAFT_01072 are separated by 75 nucleotides
H281DRAFT_01069: H281DRAFT_01069 - Cytosine/adenosine deaminase, at 1,200,296 to 1,201,720
_01069
H281DRAFT_01070: H281DRAFT_01070 - methyl-accepting chemotaxis sensory transducer with Cache sensor, at 1,202,057 to 1,203,943
_01070
H281DRAFT_01071: H281DRAFT_01071 - muconolactone delta-isomerase (EC 5.3.3.4), at 1,203,981 to 1,204,259
_01071
H281DRAFT_01072: H281DRAFT_01072 - muconate cycloisomerase (EC 5.5.1.1), at 1,204,335 to 1,205,546
_01072
Position (kb)
1202
1203
1204 Strain fitness (log2 ratio)
-1
0
1 at 1201.719 kb on - strand at 1201.790 kb on + strand at 1201.791 kb on - strand at 1202.016 kb on + strand at 1202.315 kb on + strand, within H281DRAFT_01070 at 1202.489 kb on + strand, within H281DRAFT_01070 at 1202.867 kb on + strand, within H281DRAFT_01070 at 1202.883 kb on - strand, within H281DRAFT_01070 at 1203.010 kb on + strand, within H281DRAFT_01070 at 1203.492 kb on + strand, within H281DRAFT_01070 at 1203.493 kb on - strand, within H281DRAFT_01070 at 1203.982 kb on + strand at 1203.983 kb on - strand at 1204.097 kb on + strand, within H281DRAFT_01071 at 1204.574 kb on - strand, within H281DRAFT_01072 at 1204.625 kb on - strand, within H281DRAFT_01072
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 1,201,719 - +0.8 1,201,790 + +0.1 1,201,791 - +0.3 1,202,016 + -0.1 1,202,315 + H281DRAFT_01070 0.14 +0.1 1,202,489 + H281DRAFT_01070 0.23 +0.7 1,202,867 + H281DRAFT_01070 0.43 -0.1 1,202,883 - H281DRAFT_01070 0.44 +0.2 1,203,010 + H281DRAFT_01070 0.51 -0.2 1,203,492 + H281DRAFT_01070 0.76 +0.6 1,203,493 - H281DRAFT_01070 0.76 +1.3 1,203,982 + +0.1 1,203,983 - +0.4 1,204,097 + H281DRAFT_01071 0.42 +0.2 1,204,574 - H281DRAFT_01072 0.20 +0.1 1,204,625 - H281DRAFT_01072 0.24 -0.3
Or see this region's nucleotide sequence