Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01070

Experiment: Protocatechuic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01069 and H281DRAFT_01070 are separated by 336 nucleotidesH281DRAFT_01070 and H281DRAFT_01071 are separated by 37 nucleotidesH281DRAFT_01071 and H281DRAFT_01072 are separated by 75 nucleotides H281DRAFT_01069: H281DRAFT_01069 - Cytosine/adenosine deaminase, at 1,200,296 to 1,201,720 _01069 H281DRAFT_01070: H281DRAFT_01070 - methyl-accepting chemotaxis sensory transducer with Cache sensor, at 1,202,057 to 1,203,943 _01070 H281DRAFT_01071: H281DRAFT_01071 - muconolactone delta-isomerase (EC 5.3.3.4), at 1,203,981 to 1,204,259 _01071 H281DRAFT_01072: H281DRAFT_01072 - muconate cycloisomerase (EC 5.5.1.1), at 1,204,335 to 1,205,546 _01072 Position (kb) 1202 1203 1204Strain fitness (log2 ratio) -1 0 1at 1201.719 kb on - strandat 1201.790 kb on + strandat 1201.791 kb on - strandat 1202.016 kb on + strandat 1202.315 kb on + strand, within H281DRAFT_01070at 1202.489 kb on + strand, within H281DRAFT_01070at 1202.867 kb on + strand, within H281DRAFT_01070at 1202.883 kb on - strand, within H281DRAFT_01070at 1203.010 kb on + strand, within H281DRAFT_01070at 1203.492 kb on + strand, within H281DRAFT_01070at 1203.493 kb on - strand, within H281DRAFT_01070at 1203.982 kb on + strandat 1203.983 kb on - strandat 1204.097 kb on + strand, within H281DRAFT_01071at 1204.574 kb on - strand, within H281DRAFT_01072at 1204.625 kb on - strand, within H281DRAFT_01072

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
remove
1,201,719 - +0.8
1,201,790 + +0.1
1,201,791 - +0.3
1,202,016 + -0.1
1,202,315 + H281DRAFT_01070 0.14 +0.1
1,202,489 + H281DRAFT_01070 0.23 +0.7
1,202,867 + H281DRAFT_01070 0.43 -0.1
1,202,883 - H281DRAFT_01070 0.44 +0.2
1,203,010 + H281DRAFT_01070 0.51 -0.2
1,203,492 + H281DRAFT_01070 0.76 +0.6
1,203,493 - H281DRAFT_01070 0.76 +1.3
1,203,982 + +0.1
1,203,983 - +0.4
1,204,097 + H281DRAFT_01071 0.42 +0.2
1,204,574 - H281DRAFT_01072 0.20 +0.1
1,204,625 - H281DRAFT_01072 0.24 -0.3

Or see this region's nucleotide sequence