Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00590 and H281DRAFT_00591 are separated by 145 nucleotides H281DRAFT_00591 and H281DRAFT_00592 are separated by 128 nucleotides H281DRAFT_00592 and H281DRAFT_00593 are separated by 142 nucleotides
H281DRAFT_00590: H281DRAFT_00590 - DNA replication and repair protein RadA, at 657,579 to 658,955
_00590
H281DRAFT_00591: H281DRAFT_00591 - Protein of unknown function (DUF2866), at 659,101 to 659,379
_00591
H281DRAFT_00592: H281DRAFT_00592 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 659,508 to 660,650
_00592
H281DRAFT_00593: H281DRAFT_00593 - ATP-binding cassette, subfamily F, member 3, at 660,793 to 662,742
_00593
Position (kb) 659
660
661 Strain fitness (log2 ratio) -1
0
1 at 658.757 kb on - strand, within H281DRAFT_00590 at 658.768 kb on + strand, within H281DRAFT_00590 at 658.768 kb on + strand, within H281DRAFT_00590 at 658.769 kb on - strand, within H281DRAFT_00590 at 658.769 kb on - strand, within H281DRAFT_00590 at 658.886 kb on - strand at 658.886 kb on - strand at 658.886 kb on - strand at 658.894 kb on + strand at 658.894 kb on + strand at 658.895 kb on - strand at 658.895 kb on - strand at 658.954 kb on - strand at 658.954 kb on - strand at 659.004 kb on - strand at 659.008 kb on - strand at 659.025 kb on - strand at 659.063 kb on + strand at 659.063 kb on + strand at 659.064 kb on - strand at 659.544 kb on + strand at 659.882 kb on - strand, within H281DRAFT_00592 at 659.891 kb on - strand, within H281DRAFT_00592 at 660.103 kb on - strand, within H281DRAFT_00592 at 660.103 kb on - strand, within H281DRAFT_00592 at 660.103 kb on - strand, within H281DRAFT_00592 at 660.238 kb on + strand, within H281DRAFT_00592 at 660.305 kb on - strand at 660.340 kb on + strand, within H281DRAFT_00592 at 660.488 kb on - strand, within H281DRAFT_00592 at 660.664 kb on - strand at 661.592 kb on + strand, within H281DRAFT_00593
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 658,757 - H281DRAFT_00590 0.86 -1.5 658,768 + H281DRAFT_00590 0.86 -1.3 658,768 + H281DRAFT_00590 0.86 -0.2 658,769 - H281DRAFT_00590 0.86 +0.1 658,769 - H281DRAFT_00590 0.86 +0.2 658,886 - -0.1 658,886 - -0.5 658,886 - -0.5 658,894 + +0.9 658,894 + +0.4 658,895 - +0.2 658,895 - +0.3 658,954 - -0.4 658,954 - -0.7 659,004 - -0.0 659,008 - -0.4 659,025 - -0.2 659,063 + -0.3 659,063 + -0.5 659,064 - -0.0 659,544 + +0.4 659,882 - H281DRAFT_00592 0.33 +0.5 659,891 - H281DRAFT_00592 0.34 -0.0 660,103 - H281DRAFT_00592 0.52 +0.2 660,103 - H281DRAFT_00592 0.52 -0.4 660,103 - H281DRAFT_00592 0.52 -0.4 660,238 + H281DRAFT_00592 0.64 +0.1 660,305 - +0.6 660,340 + H281DRAFT_00592 0.73 +0.0 660,488 - H281DRAFT_00592 0.86 +0.6 660,664 - +0.4 661,592 + H281DRAFT_00593 0.41 -0.2
Or see this region's nucleotide sequence