Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00248 and H281DRAFT_00249 are separated by 95 nucleotides H281DRAFT_00249 and H281DRAFT_00250 are separated by 434 nucleotides H281DRAFT_00250 and H281DRAFT_00251 are separated by 77 nucleotides H281DRAFT_00251 and H281DRAFT_00252 are separated by 16 nucleotides
H281DRAFT_00248: H281DRAFT_00248 - hypothetical protein, at 265,550 to 265,981
_00248
H281DRAFT_00249: H281DRAFT_00249 - hypothetical protein, at 266,077 to 266,346
_00249
H281DRAFT_00250: H281DRAFT_00250 - hypothetical protein, at 266,781 to 267,395
_00250
H281DRAFT_00251: H281DRAFT_00251 - Transcriptional regulator, at 267,473 to 268,075
_00251
H281DRAFT_00252: H281DRAFT_00252 - hypothetical protein, at 268,092 to 268,292
_00252
Position (kb) 266
267
268 Strain fitness (log2 ratio) -1
0
1 at 265.813 kb on - strand, within H281DRAFT_00248 at 265.967 kb on - strand at 266.458 kb on - strand at 266.458 kb on - strand at 266.564 kb on + strand at 266.564 kb on + strand at 266.565 kb on - strand at 266.839 kb on + strand at 266.840 kb on - strand at 267.082 kb on - strand, within H281DRAFT_00250 at 267.177 kb on - strand, within H281DRAFT_00250 at 267.308 kb on + strand, within H281DRAFT_00250 at 267.309 kb on - strand, within H281DRAFT_00250 at 267.342 kb on + strand at 267.417 kb on - strand at 267.420 kb on + strand at 267.420 kb on + strand at 267.438 kb on + strand at 267.459 kb on + strand at 267.459 kb on + strand at 267.460 kb on - strand at 267.475 kb on - strand at 267.995 kb on + strand, within H281DRAFT_00251 at 268.039 kb on + strand at 268.039 kb on + strand at 268.040 kb on - strand at 268.097 kb on + strand at 268.117 kb on - strand, within H281DRAFT_00252 at 268.117 kb on - strand, within H281DRAFT_00252 at 268.333 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 265,813 - H281DRAFT_00248 0.61 +0.7 265,967 - +0.4 266,458 - +0.1 266,458 - -0.1 266,564 + +0.6 266,564 + +0.4 266,565 - -0.4 266,839 + +0.8 266,840 - -0.1 267,082 - H281DRAFT_00250 0.49 +0.6 267,177 - H281DRAFT_00250 0.64 +0.8 267,308 + H281DRAFT_00250 0.86 +0.5 267,309 - H281DRAFT_00250 0.86 +0.3 267,342 + -0.2 267,417 - -0.4 267,420 + -0.5 267,420 + +0.5 267,438 + +0.6 267,459 + -0.2 267,459 + -0.2 267,460 - +0.2 267,475 - +1.1 267,995 + H281DRAFT_00251 0.87 +0.1 268,039 + +0.3 268,039 + -0.6 268,040 - -0.1 268,097 + +0.5 268,117 - H281DRAFT_00252 0.12 -0.1 268,117 - H281DRAFT_00252 0.12 -0.1 268,333 + -0.0
Or see this region's nucleotide sequence