Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00192

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00190 and H281DRAFT_00191 are separated by 45 nucleotidesH281DRAFT_00191 and H281DRAFT_00192 are separated by 151 nucleotidesH281DRAFT_00192 and H281DRAFT_00193 are separated by 408 nucleotides H281DRAFT_00190: H281DRAFT_00190 - hypothetical protein, at 205,016 to 205,153 _00190 H281DRAFT_00191: H281DRAFT_00191 - hypothetical protein, at 205,199 to 205,378 _00191 H281DRAFT_00192: H281DRAFT_00192 - metabolite-proton symporter, at 205,530 to 206,837 _00192 H281DRAFT_00193: H281DRAFT_00193 - protein TonB, at 207,246 to 207,785 _00193 Position (kb) 205 206 207Strain fitness (log2 ratio) -2 -1 0 1at 204.539 kb on + strandat 204.540 kb on - strandat 204.571 kb on + strandat 204.572 kb on - strandat 204.572 kb on - strandat 204.659 kb on + strandat 204.659 kb on + strandat 204.660 kb on - strandat 204.721 kb on + strandat 204.721 kb on + strandat 204.722 kb on - strandat 204.722 kb on - strandat 204.791 kb on + strandat 204.792 kb on - strandat 204.792 kb on - strandat 204.831 kb on + strandat 204.832 kb on - strandat 204.832 kb on - strandat 204.833 kb on + strandat 204.929 kb on - strandat 204.954 kb on + strandat 204.954 kb on + strandat 204.954 kb on + strandat 204.955 kb on - strandat 204.955 kb on - strandat 205.054 kb on - strand, within H281DRAFT_00190at 205.101 kb on - strand, within H281DRAFT_00190at 205.104 kb on - strand, within H281DRAFT_00190at 205.106 kb on + strand, within H281DRAFT_00190at 205.124 kb on + strand, within H281DRAFT_00190at 205.124 kb on + strand, within H281DRAFT_00190at 205.124 kb on + strand, within H281DRAFT_00190at 205.125 kb on - strand, within H281DRAFT_00190at 205.125 kb on - strand, within H281DRAFT_00190at 205.125 kb on - strand, within H281DRAFT_00190at 205.125 kb on - strand, within H281DRAFT_00190at 205.143 kb on - strandat 205.143 kb on - strandat 205.143 kb on - strandat 205.143 kb on - strandat 205.143 kb on - strandat 205.146 kb on - strandat 205.146 kb on - strandat 205.152 kb on - strandat 205.234 kb on + strand, within H281DRAFT_00191at 205.364 kb on + strandat 205.364 kb on + strandat 205.365 kb on - strandat 205.365 kb on - strandat 205.365 kb on - strandat 205.365 kb on - strandat 205.365 kb on - strandat 205.399 kb on + strandat 205.418 kb on + strandat 205.419 kb on - strandat 205.420 kb on + strandat 205.420 kb on + strandat 205.420 kb on + strandat 205.531 kb on + strandat 205.606 kb on + strandat 205.607 kb on - strandat 205.716 kb on - strand, within H281DRAFT_00192at 206.021 kb on - strand, within H281DRAFT_00192at 206.048 kb on - strand, within H281DRAFT_00192at 206.059 kb on + strand, within H281DRAFT_00192at 206.200 kb on + strand, within H281DRAFT_00192at 206.200 kb on + strand, within H281DRAFT_00192at 206.720 kb on - strandat 206.726 kb on - strandat 206.734 kb on + strandat 206.735 kb on - strandat 206.852 kb on + strandat 206.853 kb on - strandat 206.853 kb on - strandat 206.996 kb on - strandat 206.996 kb on - strandat 207.191 kb on - strandat 207.443 kb on - strand, within H281DRAFT_00193at 207.534 kb on + strand, within H281DRAFT_00193at 207.535 kb on - strand, within H281DRAFT_00193at 207.535 kb on - strand, within H281DRAFT_00193at 207.538 kb on + strand, within H281DRAFT_00193at 207.538 kb on + strand, within H281DRAFT_00193at 207.539 kb on - strand, within H281DRAFT_00193at 207.797 kb on - strandat 207.816 kb on + strandat 207.817 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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204,539 + -0.7
204,540 - -0.1
204,571 + -0.1
204,572 - +0.7
204,572 - -0.3
204,659 + +0.8
204,659 + -0.2
204,660 - +0.1
204,721 + -0.1
204,721 + +0.1
204,722 - -0.2
204,722 - +0.3
204,791 + +0.6
204,792 - +0.7
204,792 - +0.2
204,831 + +0.3
204,832 - +1.5
204,832 - +0.4
204,833 + +0.6
204,929 - +0.1
204,954 + +0.2
204,954 + -0.0
204,954 + -0.3
204,955 - -0.0
204,955 - -0.6
205,054 - H281DRAFT_00190 0.28 +0.3
205,101 - H281DRAFT_00190 0.62 +0.7
205,104 - H281DRAFT_00190 0.64 -0.2
205,106 + H281DRAFT_00190 0.65 -0.1
205,124 + H281DRAFT_00190 0.78 +0.2
205,124 + H281DRAFT_00190 0.78 +0.0
205,124 + H281DRAFT_00190 0.78 -1.1
205,125 - H281DRAFT_00190 0.79 -0.2
205,125 - H281DRAFT_00190 0.79 +0.3
205,125 - H281DRAFT_00190 0.79 -0.6
205,125 - H281DRAFT_00190 0.79 -0.4
205,143 - +0.3
205,143 - +0.3
205,143 - -0.1
205,143 - -0.2
205,143 - -1.1
205,146 - +1.1
205,146 - +0.1
205,152 - -1.8
205,234 + H281DRAFT_00191 0.19 +0.3
205,364 + -0.2
205,364 + -0.0
205,365 - +0.1
205,365 - -0.4
205,365 - -1.0
205,365 - -0.7
205,365 - -0.0
205,399 + +0.2
205,418 + +0.2
205,419 - -0.3
205,420 + -0.2
205,420 + +0.0
205,420 + +0.3
205,531 + +0.4
205,606 + +0.0
205,607 - -0.2
205,716 - H281DRAFT_00192 0.14 -2.0
206,021 - H281DRAFT_00192 0.38 +0.4
206,048 - H281DRAFT_00192 0.40 +0.8
206,059 + H281DRAFT_00192 0.40 +0.5
206,200 + H281DRAFT_00192 0.51 +0.5
206,200 + H281DRAFT_00192 0.51 -0.1
206,720 - -0.0
206,726 - -0.3
206,734 + +0.6
206,735 - +0.4
206,852 + -0.2
206,853 - +0.3
206,853 - +0.5
206,996 - +0.2
206,996 - -0.3
207,191 - +0.3
207,443 - H281DRAFT_00193 0.36 +0.5
207,534 + H281DRAFT_00193 0.53 +0.4
207,535 - H281DRAFT_00193 0.54 +0.1
207,535 - H281DRAFT_00193 0.54 -0.7
207,538 + H281DRAFT_00193 0.54 +0.2
207,538 + H281DRAFT_00193 0.54 -0.0
207,539 - H281DRAFT_00193 0.54 -0.9
207,797 - -0.2
207,816 + -0.5
207,817 - -0.1

Or see this region's nucleotide sequence