Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00085 and H281DRAFT_00086 are separated by 55 nucleotides H281DRAFT_00086 and H281DRAFT_00087 are separated by 36 nucleotides H281DRAFT_00087 and H281DRAFT_00088 are separated by 49 nucleotides
H281DRAFT_00085: H281DRAFT_00085 - urease. Metallo peptidase. MEROPS family M38, at 86,408 to 88,114
_00085
H281DRAFT_00086: H281DRAFT_00086 - urease subunit beta, at 88,170 to 88,475
_00086
H281DRAFT_00087: H281DRAFT_00087 - urease subunit gamma, at 88,512 to 88,898
_00087
H281DRAFT_00088: H281DRAFT_00088 - amino acid ABC transporter substrate-binding protein, PAAT family, at 88,948 to 89,751
_00088
Position (kb) 88
89 Strain fitness (log2 ratio) -1
0
1
2 at 87.251 kb on + strand, within H281DRAFT_00085 at 87.251 kb on + strand, within H281DRAFT_00085 at 87.301 kb on - strand, within H281DRAFT_00085 at 87.304 kb on + strand, within H281DRAFT_00085 at 87.304 kb on + strand, within H281DRAFT_00085 at 87.305 kb on - strand, within H281DRAFT_00085 at 87.305 kb on - strand at 87.709 kb on + strand, within H281DRAFT_00085 at 87.996 kb on + strand at 88.087 kb on - strand at 88.106 kb on + strand at 88.348 kb on + strand, within H281DRAFT_00086 at 88.489 kb on + strand at 88.489 kb on + strand at 88.489 kb on + strand at 88.496 kb on - strand at 88.869 kb on + strand at 88.870 kb on - strand at 88.995 kb on + strand at 88.995 kb on + strand at 88.996 kb on - strand at 88.996 kb on - strand at 89.366 kb on + strand, within H281DRAFT_00088 at 89.367 kb on - strand, within H281DRAFT_00088 at 89.367 kb on - strand, within H281DRAFT_00088
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 87,251 + H281DRAFT_00085 0.49 -0.4 87,251 + H281DRAFT_00085 0.49 -0.2 87,301 - H281DRAFT_00085 0.52 +0.9 87,304 + H281DRAFT_00085 0.52 +0.2 87,304 + H281DRAFT_00085 0.52 +0.1 87,305 - H281DRAFT_00085 0.53 -0.3 87,305 - +1.8 87,709 + H281DRAFT_00085 0.76 -0.5 87,996 + -0.1 88,087 - +0.2 88,106 + +1.0 88,348 + H281DRAFT_00086 0.58 +0.6 88,489 + +0.1 88,489 + +0.1 88,489 + +0.2 88,496 - +1.5 88,869 + -0.6 88,870 - -0.6 88,995 + -0.6 88,995 + -0.6 88,996 - +0.2 88,996 - -0.3 89,366 + H281DRAFT_00088 0.52 -0.2 89,367 - H281DRAFT_00088 0.52 +1.0 89,367 - H281DRAFT_00088 0.52 -0.6
Or see this region's nucleotide sequence