Experiment: m.b. Paraquat dichloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3967 and HP15_3968 overlap by 4 nucleotides HP15_3968 and HP15_3969 are separated by 31 nucleotides
HP15_3967: HP15_3967 - integral membrane sensor signal transduction histidine kinase, at 4,196,290 to 4,197,702
_3967
HP15_3968: HP15_3968 - two component transcriptional regulator, winged helix family, at 4,197,699 to 4,198,373
_3968
HP15_3969: HP15_3969 - glycosyl transferase, family 39, at 4,198,405 to 4,199,952
_3969
Position (kb)
4197
4198
4199 Strain fitness (log2 ratio)
-1
0
1 at 4196.731 kb on + strand, within HP15_3967 at 4196.739 kb on - strand, within HP15_3967 at 4196.865 kb on + strand, within HP15_3967 at 4196.868 kb on - strand, within HP15_3967 at 4196.917 kb on - strand, within HP15_3967 at 4197.018 kb on - strand, within HP15_3967 at 4197.044 kb on - strand, within HP15_3967 at 4197.140 kb on + strand, within HP15_3967 at 4197.140 kb on + strand, within HP15_3967 at 4197.172 kb on + strand, within HP15_3967 at 4197.270 kb on + strand, within HP15_3967 at 4197.272 kb on - strand, within HP15_3967 at 4197.278 kb on - strand, within HP15_3967 at 4197.399 kb on + strand, within HP15_3967 at 4197.455 kb on - strand, within HP15_3967 at 4197.470 kb on - strand, within HP15_3967 at 4197.474 kb on - strand, within HP15_3967 at 4197.506 kb on - strand, within HP15_3967 at 4197.545 kb on + strand, within HP15_3967 at 4197.552 kb on - strand, within HP15_3967 at 4197.555 kb on + strand, within HP15_3967 at 4197.574 kb on + strand at 4197.716 kb on + strand at 4197.724 kb on + strand at 4197.809 kb on + strand, within HP15_3968 at 4197.809 kb on + strand, within HP15_3968 at 4197.809 kb on + strand, within HP15_3968 at 4197.817 kb on - strand, within HP15_3968 at 4197.817 kb on - strand, within HP15_3968 at 4197.817 kb on - strand, within HP15_3968 at 4197.823 kb on - strand, within HP15_3968 at 4197.844 kb on - strand, within HP15_3968 at 4197.852 kb on - strand, within HP15_3968 at 4197.884 kb on + strand, within HP15_3968 at 4197.901 kb on + strand, within HP15_3968 at 4197.998 kb on + strand, within HP15_3968 at 4198.006 kb on - strand, within HP15_3968 at 4198.114 kb on - strand, within HP15_3968 at 4198.226 kb on - strand, within HP15_3968 at 4198.257 kb on + strand, within HP15_3968 at 4198.281 kb on - strand, within HP15_3968 at 4198.316 kb on - strand at 4198.347 kb on - strand at 4198.567 kb on - strand, within HP15_3969 at 4198.608 kb on + strand, within HP15_3969 at 4198.701 kb on - strand, within HP15_3969 at 4198.707 kb on - strand, within HP15_3969 at 4198.708 kb on - strand, within HP15_3969 at 4198.775 kb on + strand, within HP15_3969 at 4198.797 kb on + strand, within HP15_3969 at 4198.805 kb on - strand, within HP15_3969 at 4198.850 kb on + strand, within HP15_3969 at 4198.862 kb on - strand, within HP15_3969 at 4198.898 kb on - strand, within HP15_3969 at 4198.977 kb on + strand, within HP15_3969 at 4199.004 kb on - strand, within HP15_3969 at 4199.132 kb on - strand, within HP15_3969 at 4199.153 kb on - strand, within HP15_3969 at 4199.246 kb on + strand, within HP15_3969 at 4199.246 kb on + strand, within HP15_3969 at 4199.274 kb on - strand, within HP15_3969
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.002 mg/ml remove 4,196,731 + HP15_3967 0.31 -0.9 4,196,739 - HP15_3967 0.32 -0.3 4,196,865 + HP15_3967 0.41 +0.9 4,196,868 - HP15_3967 0.41 +0.0 4,196,917 - HP15_3967 0.44 +0.4 4,197,018 - HP15_3967 0.52 +1.7 4,197,044 - HP15_3967 0.53 +0.2 4,197,140 + HP15_3967 0.60 -0.2 4,197,140 + HP15_3967 0.60 +0.2 4,197,172 + HP15_3967 0.62 +0.6 4,197,270 + HP15_3967 0.69 -0.2 4,197,272 - HP15_3967 0.69 +0.1 4,197,278 - HP15_3967 0.70 +0.6 4,197,399 + HP15_3967 0.78 -1.6 4,197,455 - HP15_3967 0.82 -0.2 4,197,470 - HP15_3967 0.84 -0.0 4,197,474 - HP15_3967 0.84 -1.6 4,197,506 - HP15_3967 0.86 -0.3 4,197,545 + HP15_3967 0.89 +0.7 4,197,552 - HP15_3967 0.89 -0.6 4,197,555 + HP15_3967 0.90 +0.9 4,197,574 + +0.3 4,197,716 + +0.1 4,197,724 + +0.3 4,197,809 + HP15_3968 0.16 +0.2 4,197,809 + HP15_3968 0.16 -0.9 4,197,809 + HP15_3968 0.16 -1.1 4,197,817 - HP15_3968 0.17 -0.4 4,197,817 - HP15_3968 0.17 +0.5 4,197,817 - HP15_3968 0.17 -0.4 4,197,823 - HP15_3968 0.18 +0.8 4,197,844 - HP15_3968 0.21 -0.1 4,197,852 - HP15_3968 0.23 +0.9 4,197,884 + HP15_3968 0.27 +0.1 4,197,901 + HP15_3968 0.30 -1.3 4,197,998 + HP15_3968 0.44 -1.1 4,198,006 - HP15_3968 0.45 -0.3 4,198,114 - HP15_3968 0.61 +0.2 4,198,226 - HP15_3968 0.78 -0.5 4,198,257 + HP15_3968 0.83 -0.5 4,198,281 - HP15_3968 0.86 -0.0 4,198,316 - +0.2 4,198,347 - -0.7 4,198,567 - HP15_3969 0.10 +0.4 4,198,608 + HP15_3969 0.13 +0.0 4,198,701 - HP15_3969 0.19 +0.4 4,198,707 - HP15_3969 0.20 -0.2 4,198,708 - HP15_3969 0.20 +0.0 4,198,775 + HP15_3969 0.24 +0.1 4,198,797 + HP15_3969 0.25 -0.2 4,198,805 - HP15_3969 0.26 +0.1 4,198,850 + HP15_3969 0.29 -0.3 4,198,862 - HP15_3969 0.30 -0.0 4,198,898 - HP15_3969 0.32 +0.1 4,198,977 + HP15_3969 0.37 -0.1 4,199,004 - HP15_3969 0.39 -0.9 4,199,132 - HP15_3969 0.47 -0.9 4,199,153 - HP15_3969 0.48 +0.2 4,199,246 + HP15_3969 0.54 -1.1 4,199,246 + HP15_3969 0.54 +0.0 4,199,274 - HP15_3969 0.56 +0.4
Or see this region's nucleotide sequence