Strain Fitness in Dechlorosoma suillum PS around Dsui_3487

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3486 and Dsui_3487 are separated by 127 nucleotidesDsui_3487 and Dsui_3488 are separated by 50 nucleotidesDsui_3488 and Dsui_3489 overlap by 7 nucleotidesDsui_3489 and Dsui_3490 are separated by 18 nucleotides Dsui_3486: Dsui_3486 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,750,833 to 3,752,182 _3486 Dsui_3487: Dsui_3487 - Tfp pilus assembly protein PilE, at 3,752,310 to 3,752,771 _3487 Dsui_3488: Dsui_3488 - Tfp pilus assembly protein FimT, at 3,752,822 to 3,753,334 _3488 Dsui_3489: Dsui_3489 - hypothetical protein, at 3,753,328 to 3,753,705 _3489 Dsui_3490: Dsui_3490 - hypothetical protein, at 3,753,724 to 3,754,845 _3490 Position (kb) 3752 3753Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3751.523 kb on - strand, within Dsui_3486at 3751.597 kb on - strand, within Dsui_3486at 3751.715 kb on + strand, within Dsui_3486at 3751.744 kb on + strand, within Dsui_3486at 3752.000 kb on - strandat 3752.186 kb on - strandat 3752.191 kb on - strandat 3752.194 kb on + strandat 3752.201 kb on - strandat 3752.255 kb on + strandat 3752.315 kb on - strandat 3752.320 kb on - strandat 3752.320 kb on - strandat 3752.447 kb on + strand, within Dsui_3487at 3752.455 kb on - strand, within Dsui_3487at 3752.474 kb on - strand, within Dsui_3487at 3752.490 kb on - strand, within Dsui_3487at 3752.512 kb on - strand, within Dsui_3487at 3752.512 kb on - strand, within Dsui_3487at 3752.542 kb on + strand, within Dsui_3487at 3752.550 kb on - strand, within Dsui_3487at 3752.640 kb on + strand, within Dsui_3487at 3752.640 kb on + strand, within Dsui_3487at 3752.679 kb on + strand, within Dsui_3487at 3752.679 kb on + strand, within Dsui_3487at 3752.735 kb on + strandat 3752.765 kb on + strandat 3752.770 kb on + strandat 3752.773 kb on - strandat 3752.773 kb on - strandat 3752.773 kb on - strandat 3752.826 kb on + strandat 3752.836 kb on + strandat 3752.902 kb on + strand, within Dsui_3488at 3752.902 kb on + strand, within Dsui_3488at 3752.902 kb on + strand, within Dsui_3488at 3752.902 kb on + strand, within Dsui_3488at 3752.902 kb on + strand, within Dsui_3488at 3752.902 kb on + strand, within Dsui_3488at 3752.902 kb on + strand, within Dsui_3488at 3752.910 kb on - strand, within Dsui_3488at 3752.910 kb on - strand, within Dsui_3488at 3752.910 kb on - strand, within Dsui_3488at 3752.958 kb on - strand, within Dsui_3488at 3752.965 kb on + strand, within Dsui_3488at 3752.968 kb on - strand, within Dsui_3488at 3752.973 kb on - strand, within Dsui_3488at 3753.010 kb on + strand, within Dsui_3488at 3753.010 kb on + strand, within Dsui_3488at 3753.010 kb on + strand, within Dsui_3488at 3753.018 kb on - strand, within Dsui_3488at 3753.023 kb on - strand, within Dsui_3488at 3753.059 kb on - strand, within Dsui_3488at 3753.062 kb on - strand, within Dsui_3488at 3753.064 kb on + strand, within Dsui_3488at 3753.090 kb on + strand, within Dsui_3488at 3753.149 kb on - strand, within Dsui_3488at 3753.296 kb on + strandat 3753.301 kb on + strandat 3753.304 kb on - strandat 3753.318 kb on + strandat 3753.333 kb on + strandat 3753.333 kb on + strandat 3753.343 kb on - strandat 3753.367 kb on - strand, within Dsui_3489at 3753.510 kb on + strand, within Dsui_3489at 3753.510 kb on + strand, within Dsui_3489at 3753.518 kb on - strand, within Dsui_3489at 3753.518 kb on - strand, within Dsui_3489at 3753.551 kb on + strand, within Dsui_3489at 3753.568 kb on + strand, within Dsui_3489at 3753.573 kb on + strand, within Dsui_3489at 3753.573 kb on + strand, within Dsui_3489at 3753.628 kb on + strand, within Dsui_3489at 3753.645 kb on - strand, within Dsui_3489at 3753.660 kb on + strand, within Dsui_3489at 3753.684 kb on - strandat 3753.709 kb on + strandat 3753.709 kb on + strandat 3753.709 kb on + strandat 3753.717 kb on - strandat 3753.717 kb on - strandat 3753.760 kb on + strandat 3753.760 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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3,751,523 - Dsui_3486 0.51 -0.3
3,751,597 - Dsui_3486 0.57 -1.3
3,751,715 + Dsui_3486 0.65 -0.2
3,751,744 + Dsui_3486 0.67 -0.4
3,752,000 - +0.7
3,752,186 - +0.7
3,752,191 - +0.7
3,752,194 + -0.2
3,752,201 - -0.3
3,752,255 + +0.0
3,752,315 - -0.3
3,752,320 - -1.1
3,752,320 - +0.7
3,752,447 + Dsui_3487 0.30 +3.1
3,752,455 - Dsui_3487 0.31 +0.7
3,752,474 - Dsui_3487 0.35 -2.1
3,752,490 - Dsui_3487 0.39 -0.3
3,752,512 - Dsui_3487 0.44 +2.3
3,752,512 - Dsui_3487 0.44 +1.5
3,752,542 + Dsui_3487 0.50 +0.6
3,752,550 - Dsui_3487 0.52 -1.3
3,752,640 + Dsui_3487 0.71 +0.3
3,752,640 + Dsui_3487 0.71 +0.2
3,752,679 + Dsui_3487 0.80 -0.3
3,752,679 + Dsui_3487 0.80 -0.3
3,752,735 + -0.8
3,752,765 + -0.3
3,752,770 + +0.1
3,752,773 - +0.7
3,752,773 - -0.3
3,752,773 - -0.3
3,752,826 + -0.4
3,752,836 + -0.1
3,752,902 + Dsui_3488 0.16 -0.2
3,752,902 + Dsui_3488 0.16 +0.2
3,752,902 + Dsui_3488 0.16 +1.0
3,752,902 + Dsui_3488 0.16 +0.3
3,752,902 + Dsui_3488 0.16 -0.9
3,752,902 + Dsui_3488 0.16 -0.3
3,752,902 + Dsui_3488 0.16 +0.6
3,752,910 - Dsui_3488 0.17 -0.9
3,752,910 - Dsui_3488 0.17 +0.7
3,752,910 - Dsui_3488 0.17 +0.7
3,752,958 - Dsui_3488 0.27 +0.3
3,752,965 + Dsui_3488 0.28 +0.4
3,752,968 - Dsui_3488 0.28 -0.3
3,752,973 - Dsui_3488 0.29 +0.7
3,753,010 + Dsui_3488 0.37 -0.3
3,753,010 + Dsui_3488 0.37 +0.7
3,753,010 + Dsui_3488 0.37 -0.1
3,753,018 - Dsui_3488 0.38 +0.7
3,753,023 - Dsui_3488 0.39 -1.3
3,753,059 - Dsui_3488 0.46 +0.7
3,753,062 - Dsui_3488 0.47 -1.9
3,753,064 + Dsui_3488 0.47 -0.2
3,753,090 + Dsui_3488 0.52 -0.2
3,753,149 - Dsui_3488 0.64 -1.6
3,753,296 + -0.3
3,753,301 + -0.4
3,753,304 - -0.3
3,753,318 + +0.7
3,753,333 + -0.1
3,753,333 + -0.8
3,753,343 - -0.9
3,753,367 - Dsui_3489 0.10 -0.9
3,753,510 + Dsui_3489 0.48 -0.5
3,753,510 + Dsui_3489 0.48 +0.4
3,753,518 - Dsui_3489 0.50 +0.7
3,753,518 - Dsui_3489 0.50 +0.7
3,753,551 + Dsui_3489 0.59 -0.2
3,753,568 + Dsui_3489 0.63 -0.2
3,753,573 + Dsui_3489 0.65 -0.9
3,753,573 + Dsui_3489 0.65 +0.7
3,753,628 + Dsui_3489 0.79 +0.3
3,753,645 - Dsui_3489 0.84 -0.9
3,753,660 + Dsui_3489 0.88 -0.1
3,753,684 - -0.3
3,753,709 + -0.2
3,753,709 + +2.1
3,753,709 + -0.3
3,753,717 - +0.7
3,753,717 - +0.7
3,753,760 + -0.0
3,753,760 + -0.0

Or see this region's nucleotide sequence