Strain Fitness in Dechlorosoma suillum PS around Dsui_3476

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3475 and Dsui_3476 are separated by 11 nucleotidesDsui_3476 and Dsui_3477 are separated by 15 nucleotides Dsui_3475: Dsui_3475 - methyl-accepting chemotaxis protein, at 3,738,130 to 3,740,301 _3475 Dsui_3476: Dsui_3476 - chemotaxis signal transduction protein, at 3,740,313 to 3,740,831 _3476 Dsui_3477: Dsui_3477 - PAS domain S-box, at 3,740,847 to 3,742,106 _3477 Position (kb) 3740 3741Strain fitness (log2 ratio) -2 -1 0 1at 3739.355 kb on - strand, within Dsui_3475at 3739.366 kb on - strand, within Dsui_3475at 3739.514 kb on + strand, within Dsui_3475at 3739.543 kb on - strand, within Dsui_3475at 3739.582 kb on + strandat 3739.671 kb on + strand, within Dsui_3475at 3739.683 kb on + strand, within Dsui_3475at 3739.847 kb on - strand, within Dsui_3475at 3740.005 kb on - strandat 3740.007 kb on + strand, within Dsui_3475at 3740.303 kb on - strandat 3740.345 kb on - strandat 3740.367 kb on - strandat 3740.382 kb on - strand, within Dsui_3476at 3740.382 kb on - strand, within Dsui_3476at 3740.444 kb on + strand, within Dsui_3476at 3740.485 kb on + strand, within Dsui_3476at 3740.647 kb on - strand, within Dsui_3476at 3740.760 kb on + strandat 3740.802 kb on + strandat 3740.810 kb on - strandat 3740.884 kb on + strandat 3740.931 kb on - strandat 3740.934 kb on + strandat 3741.277 kb on + strand, within Dsui_3477at 3741.282 kb on + strand, within Dsui_3477at 3741.285 kb on - strand, within Dsui_3477at 3741.285 kb on - strand, within Dsui_3477at 3741.285 kb on - strand, within Dsui_3477at 3741.285 kb on - strand, within Dsui_3477at 3741.405 kb on - strandat 3741.499 kb on + strandat 3741.581 kb on + strand, within Dsui_3477at 3741.600 kb on + strand, within Dsui_3477at 3741.719 kb on + strand, within Dsui_3477at 3741.819 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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3,739,355 - Dsui_3475 0.56 -1.3
3,739,366 - Dsui_3475 0.57 -1.9
3,739,514 + Dsui_3475 0.64 -0.3
3,739,543 - Dsui_3475 0.65 +0.7
3,739,582 + -0.3
3,739,671 + Dsui_3475 0.71 +0.7
3,739,683 + Dsui_3475 0.72 +0.7
3,739,847 - Dsui_3475 0.79 -1.3
3,740,005 - +0.7
3,740,007 + Dsui_3475 0.86 -1.9
3,740,303 - +1.7
3,740,345 - -1.6
3,740,367 - +0.7
3,740,382 - Dsui_3476 0.13 +0.7
3,740,382 - Dsui_3476 0.13 +0.7
3,740,444 + Dsui_3476 0.25 +0.7
3,740,485 + Dsui_3476 0.33 -0.3
3,740,647 - Dsui_3476 0.64 +0.7
3,740,760 + +0.7
3,740,802 + -0.9
3,740,810 - +0.7
3,740,884 + +0.7
3,740,931 - +0.7
3,740,934 + +0.7
3,741,277 + Dsui_3477 0.34 -2.7
3,741,282 + Dsui_3477 0.35 -2.7
3,741,285 - Dsui_3477 0.35 -1.3
3,741,285 - Dsui_3477 0.35 -0.3
3,741,285 - Dsui_3477 0.35 +0.7
3,741,285 - Dsui_3477 0.35 -0.3
3,741,405 - +0.7
3,741,499 + +0.7
3,741,581 + Dsui_3477 0.58 -0.3
3,741,600 + Dsui_3477 0.60 +0.7
3,741,719 + Dsui_3477 0.69 -0.9
3,741,819 + +0.7

Or see this region's nucleotide sequence