Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3474 and Dsui_3475 are separated by 58 nucleotides Dsui_3475 and Dsui_3476 are separated by 11 nucleotides Dsui_3476 and Dsui_3477 are separated by 15 nucleotides
Dsui_3474: Dsui_3474 - chemotaxis protein histidine kinase-like protein, at 3,735,852 to 3,738,071
_3474
Dsui_3475: Dsui_3475 - methyl-accepting chemotaxis protein, at 3,738,130 to 3,740,301
_3475
Dsui_3476: Dsui_3476 - chemotaxis signal transduction protein, at 3,740,313 to 3,740,831
_3476
Dsui_3477: Dsui_3477 - PAS domain S-box, at 3,740,847 to 3,742,106
_3477
Position (kb)
3738
3739
3740
3741 Strain fitness (log2 ratio)
-2
-1
0
1 at 3737.153 kb on + strand, within Dsui_3474 at 3737.260 kb on - strand at 3737.270 kb on - strand at 3737.394 kb on + strand at 3737.402 kb on - strand at 3737.491 kb on + strand, within Dsui_3474 at 3737.491 kb on + strand, within Dsui_3474 at 3737.547 kb on + strand at 3737.638 kb on + strand, within Dsui_3474 at 3737.725 kb on + strand, within Dsui_3474 at 3737.733 kb on - strand, within Dsui_3474 at 3737.755 kb on + strand at 3737.873 kb on + strand at 3738.370 kb on + strand, within Dsui_3475 at 3738.538 kb on + strand, within Dsui_3475 at 3738.539 kb on - strand, within Dsui_3475 at 3738.617 kb on - strand, within Dsui_3475 at 3738.715 kb on - strand, within Dsui_3475 at 3738.877 kb on - strand, within Dsui_3475 at 3739.062 kb on - strand, within Dsui_3475 at 3739.164 kb on + strand, within Dsui_3475 at 3739.172 kb on - strand, within Dsui_3475 at 3739.195 kb on - strand, within Dsui_3475 at 3739.355 kb on - strand, within Dsui_3475 at 3739.366 kb on - strand, within Dsui_3475 at 3739.514 kb on + strand, within Dsui_3475 at 3739.543 kb on - strand, within Dsui_3475 at 3739.582 kb on + strand at 3739.671 kb on + strand, within Dsui_3475 at 3739.683 kb on + strand, within Dsui_3475 at 3739.847 kb on - strand, within Dsui_3475 at 3740.005 kb on - strand at 3740.007 kb on + strand, within Dsui_3475 at 3740.303 kb on - strand at 3740.345 kb on - strand at 3740.367 kb on - strand at 3740.382 kb on - strand, within Dsui_3476 at 3740.382 kb on - strand, within Dsui_3476 at 3740.444 kb on + strand, within Dsui_3476 at 3740.485 kb on + strand, within Dsui_3476 at 3740.647 kb on - strand, within Dsui_3476 at 3740.760 kb on + strand at 3740.802 kb on + strand at 3740.810 kb on - strand at 3740.884 kb on + strand at 3740.931 kb on - strand at 3740.934 kb on + strand at 3741.277 kb on + strand, within Dsui_3477 at 3741.282 kb on + strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477 at 3741.285 kb on - strand, within Dsui_3477
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,737,153 + Dsui_3474 0.59 -2.3 3,737,260 - -0.3 3,737,270 - +0.7 3,737,394 + +0.7 3,737,402 - +0.7 3,737,491 + Dsui_3474 0.74 -0.3 3,737,491 + Dsui_3474 0.74 -0.3 3,737,547 + +0.7 3,737,638 + Dsui_3474 0.80 +0.7 3,737,725 + Dsui_3474 0.84 -0.3 3,737,733 - Dsui_3474 0.85 +0.7 3,737,755 + +0.7 3,737,873 + +0.7 3,738,370 + Dsui_3475 0.11 -0.3 3,738,538 + Dsui_3475 0.19 +0.7 3,738,539 - Dsui_3475 0.19 -0.9 3,738,617 - Dsui_3475 0.22 +0.7 3,738,715 - Dsui_3475 0.27 +0.7 3,738,877 - Dsui_3475 0.34 +0.7 3,739,062 - Dsui_3475 0.43 -0.3 3,739,164 + Dsui_3475 0.48 +0.7 3,739,172 - Dsui_3475 0.48 -0.9 3,739,195 - Dsui_3475 0.49 -0.3 3,739,355 - Dsui_3475 0.56 -1.3 3,739,366 - Dsui_3475 0.57 -1.9 3,739,514 + Dsui_3475 0.64 -0.3 3,739,543 - Dsui_3475 0.65 +0.7 3,739,582 + -0.3 3,739,671 + Dsui_3475 0.71 +0.7 3,739,683 + Dsui_3475 0.72 +0.7 3,739,847 - Dsui_3475 0.79 -1.3 3,740,005 - +0.7 3,740,007 + Dsui_3475 0.86 -1.9 3,740,303 - +1.7 3,740,345 - -1.6 3,740,367 - +0.7 3,740,382 - Dsui_3476 0.13 +0.7 3,740,382 - Dsui_3476 0.13 +0.7 3,740,444 + Dsui_3476 0.25 +0.7 3,740,485 + Dsui_3476 0.33 -0.3 3,740,647 - Dsui_3476 0.64 +0.7 3,740,760 + +0.7 3,740,802 + -0.9 3,740,810 - +0.7 3,740,884 + +0.7 3,740,931 - +0.7 3,740,934 + +0.7 3,741,277 + Dsui_3477 0.34 -2.7 3,741,282 + Dsui_3477 0.35 -2.7 3,741,285 - Dsui_3477 0.35 -1.3 3,741,285 - Dsui_3477 0.35 -0.3 3,741,285 - Dsui_3477 0.35 +0.7 3,741,285 - Dsui_3477 0.35 -0.3
Or see this region's nucleotide sequence