Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3471 and Dsui_3472 are separated by 10 nucleotides Dsui_3472 and Dsui_3473 are separated by 10 nucleotides Dsui_3473 and Dsui_3474 overlap by 4 nucleotides Dsui_3474 and Dsui_3475 are separated by 58 nucleotides
Dsui_3471: Dsui_3471 - methyl-accepting chemotaxis protein, at 3,734,006 to 3,735,151
_3471
Dsui_3472: Dsui_3472 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,735,162 to 3,735,530
_3472
Dsui_3473: Dsui_3473 - putative NTP binding protein (contains STAS domain), at 3,735,541 to 3,735,855
_3473
Dsui_3474: Dsui_3474 - chemotaxis protein histidine kinase-like protein, at 3,735,852 to 3,738,071
_3474
Dsui_3475: Dsui_3475 - methyl-accepting chemotaxis protein, at 3,738,130 to 3,740,301
_3475
Position (kb)
3735
3736
3737
3738
3739 Strain fitness (log2 ratio)
-2
-1
0
1 at 3735.265 kb on + strand at 3735.274 kb on + strand at 3735.341 kb on - strand at 3735.497 kb on - strand at 3735.532 kb on - strand at 3735.532 kb on - strand at 3735.546 kb on + strand at 3735.578 kb on + strand, within Dsui_3473 at 3735.676 kb on - strand, within Dsui_3473 at 3735.774 kb on - strand at 3735.836 kb on + strand at 3735.900 kb on - strand at 3736.447 kb on + strand, within Dsui_3474 at 3736.529 kb on - strand, within Dsui_3474 at 3736.591 kb on + strand, within Dsui_3474 at 3736.607 kb on + strand, within Dsui_3474 at 3736.636 kb on - strand, within Dsui_3474 at 3736.906 kb on - strand, within Dsui_3474 at 3736.941 kb on + strand, within Dsui_3474 at 3736.944 kb on - strand, within Dsui_3474 at 3737.005 kb on + strand at 3737.106 kb on - strand, within Dsui_3474 at 3737.108 kb on + strand at 3737.153 kb on + strand, within Dsui_3474 at 3737.260 kb on - strand at 3737.270 kb on - strand at 3737.394 kb on + strand at 3737.402 kb on - strand at 3737.491 kb on + strand, within Dsui_3474 at 3737.491 kb on + strand, within Dsui_3474 at 3737.547 kb on + strand at 3737.638 kb on + strand, within Dsui_3474 at 3737.725 kb on + strand, within Dsui_3474 at 3737.733 kb on - strand, within Dsui_3474 at 3737.755 kb on + strand at 3737.873 kb on + strand at 3738.370 kb on + strand, within Dsui_3475 at 3738.538 kb on + strand, within Dsui_3475 at 3738.539 kb on - strand, within Dsui_3475 at 3738.617 kb on - strand, within Dsui_3475 at 3738.715 kb on - strand, within Dsui_3475 at 3738.877 kb on - strand, within Dsui_3475 at 3739.062 kb on - strand, within Dsui_3475
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,735,265 + -0.3 3,735,274 + +0.7 3,735,341 - +0.7 3,735,497 - +0.7 3,735,532 - +0.7 3,735,532 - -0.3 3,735,546 + -0.9 3,735,578 + Dsui_3473 0.12 +0.7 3,735,676 - Dsui_3473 0.43 -0.9 3,735,774 - +0.7 3,735,836 + +0.7 3,735,900 - -0.9 3,736,447 + Dsui_3474 0.27 -2.1 3,736,529 - Dsui_3474 0.30 -1.3 3,736,591 + Dsui_3474 0.33 -1.6 3,736,607 + Dsui_3474 0.34 +0.7 3,736,636 - Dsui_3474 0.35 -0.3 3,736,906 - Dsui_3474 0.47 -0.3 3,736,941 + Dsui_3474 0.49 -1.3 3,736,944 - Dsui_3474 0.49 -1.3 3,737,005 + +0.7 3,737,106 - Dsui_3474 0.56 +0.7 3,737,108 + +0.7 3,737,153 + Dsui_3474 0.59 -2.3 3,737,260 - -0.3 3,737,270 - +0.7 3,737,394 + +0.7 3,737,402 - +0.7 3,737,491 + Dsui_3474 0.74 -0.3 3,737,491 + Dsui_3474 0.74 -0.3 3,737,547 + +0.7 3,737,638 + Dsui_3474 0.80 +0.7 3,737,725 + Dsui_3474 0.84 -0.3 3,737,733 - Dsui_3474 0.85 +0.7 3,737,755 + +0.7 3,737,873 + +0.7 3,738,370 + Dsui_3475 0.11 -0.3 3,738,538 + Dsui_3475 0.19 +0.7 3,738,539 - Dsui_3475 0.19 -0.9 3,738,617 - Dsui_3475 0.22 +0.7 3,738,715 - Dsui_3475 0.27 +0.7 3,738,877 - Dsui_3475 0.34 +0.7 3,739,062 - Dsui_3475 0.43 -0.3
Or see this region's nucleotide sequence