Strain Fitness in Dechlorosoma suillum PS around Dsui_3472

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3471 and Dsui_3472 are separated by 10 nucleotidesDsui_3472 and Dsui_3473 are separated by 10 nucleotidesDsui_3473 and Dsui_3474 overlap by 4 nucleotides Dsui_3471: Dsui_3471 - methyl-accepting chemotaxis protein, at 3,734,006 to 3,735,151 _3471 Dsui_3472: Dsui_3472 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,735,162 to 3,735,530 _3472 Dsui_3473: Dsui_3473 - putative NTP binding protein (contains STAS domain), at 3,735,541 to 3,735,855 _3473 Dsui_3474: Dsui_3474 - chemotaxis protein histidine kinase-like protein, at 3,735,852 to 3,738,071 _3474 Position (kb) 3735 3736Strain fitness (log2 ratio) -2 -1 0 1at 3734.209 kb on + strandat 3734.279 kb on - strandat 3734.430 kb on + strandat 3734.430 kb on + strand, within Dsui_3471at 3734.703 kb on - strandat 3734.724 kb on + strand, within Dsui_3471at 3734.793 kb on + strandat 3734.807 kb on - strandat 3734.840 kb on + strand, within Dsui_3471at 3735.265 kb on + strandat 3735.274 kb on + strandat 3735.341 kb on - strandat 3735.497 kb on - strandat 3735.532 kb on - strandat 3735.532 kb on - strandat 3735.546 kb on + strandat 3735.578 kb on + strand, within Dsui_3473at 3735.676 kb on - strand, within Dsui_3473at 3735.774 kb on - strandat 3735.836 kb on + strandat 3735.900 kb on - strandat 3736.447 kb on + strand, within Dsui_3474at 3736.529 kb on - strand, within Dsui_3474

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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3,734,209 + -0.3
3,734,279 - +0.7
3,734,430 + +0.7
3,734,430 + Dsui_3471 0.37 -1.3
3,734,703 - -0.9
3,734,724 + Dsui_3471 0.63 -0.9
3,734,793 + +0.7
3,734,807 - +0.7
3,734,840 + Dsui_3471 0.73 -1.3
3,735,265 + -0.3
3,735,274 + +0.7
3,735,341 - +0.7
3,735,497 - +0.7
3,735,532 - +0.7
3,735,532 - -0.3
3,735,546 + -0.9
3,735,578 + Dsui_3473 0.12 +0.7
3,735,676 - Dsui_3473 0.43 -0.9
3,735,774 - +0.7
3,735,836 + +0.7
3,735,900 - -0.9
3,736,447 + Dsui_3474 0.27 -2.1
3,736,529 - Dsui_3474 0.30 -1.3

Or see this region's nucleotide sequence