Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3439 and Dsui_3440 are separated by 127 nucleotides Dsui_3440 and Dsui_3441 overlap by 4 nucleotides Dsui_3441 and Dsui_3442 are separated by 26 nucleotides
Dsui_3439: Dsui_3439 - methyl-accepting chemotaxis protein, at 3,694,316 to 3,695,965
_3439
Dsui_3440: Dsui_3440 - Protein of unknown function (DUF2892), at 3,696,093 to 3,696,302
_3440
Dsui_3441: Dsui_3441 - cation/multidrug efflux pump, at 3,696,299 to 3,699,550
_3441
Dsui_3442: Dsui_3442 - NADH dehydrogenase, FAD-containing subunit, at 3,699,577 to 3,700,851
_3442
Position (kb)
3696
3697
3698
3699
3700 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3695.325 kb on - strand, within Dsui_3439 at 3695.611 kb on + strand, within Dsui_3439 at 3695.660 kb on + strand, within Dsui_3439 at 3695.683 kb on - strand, within Dsui_3439 at 3695.684 kb on - strand, within Dsui_3439 at 3695.730 kb on + strand, within Dsui_3439 at 3695.820 kb on - strand at 3695.925 kb on + strand at 3696.036 kb on - strand at 3696.115 kb on + strand at 3696.167 kb on - strand, within Dsui_3440 at 3696.255 kb on - strand, within Dsui_3440 at 3696.298 kb on - strand at 3696.313 kb on + strand at 3696.529 kb on - strand at 3696.559 kb on + strand at 3696.612 kb on - strand at 3696.679 kb on + strand at 3696.716 kb on - strand, within Dsui_3441 at 3696.751 kb on - strand, within Dsui_3441 at 3696.839 kb on - strand, within Dsui_3441 at 3696.885 kb on + strand, within Dsui_3441 at 3696.988 kb on - strand at 3697.092 kb on - strand, within Dsui_3441 at 3697.306 kb on + strand, within Dsui_3441 at 3697.309 kb on - strand, within Dsui_3441 at 3697.421 kb on + strand, within Dsui_3441 at 3697.564 kb on + strand, within Dsui_3441 at 3697.743 kb on + strand, within Dsui_3441 at 3697.751 kb on - strand, within Dsui_3441 at 3698.083 kb on - strand at 3698.083 kb on - strand at 3698.139 kb on - strand, within Dsui_3441 at 3698.304 kb on - strand at 3698.341 kb on + strand, within Dsui_3441 at 3698.598 kb on - strand, within Dsui_3441 at 3698.720 kb on - strand, within Dsui_3441 at 3698.722 kb on + strand, within Dsui_3441 at 3698.730 kb on - strand, within Dsui_3441 at 3698.836 kb on + strand at 3698.880 kb on - strand, within Dsui_3441 at 3699.169 kb on + strand at 3699.315 kb on - strand at 3699.415 kb on - strand at 3699.555 kb on + strand at 3699.606 kb on + strand at 3699.686 kb on + strand at 3699.751 kb on - strand at 3699.833 kb on - strand, within Dsui_3442 at 3699.895 kb on + strand at 3700.034 kb on - strand at 3700.046 kb on - strand, within Dsui_3442 at 3700.169 kb on - strand, within Dsui_3442 at 3700.184 kb on - strand at 3700.227 kb on - strand, within Dsui_3442 at 3700.257 kb on + strand, within Dsui_3442 at 3700.265 kb on - strand, within Dsui_3442 at 3700.286 kb on - strand, within Dsui_3442 at 3700.302 kb on - strand, within Dsui_3442 at 3700.302 kb on - strand, within Dsui_3442 at 3700.404 kb on + strand, within Dsui_3442 at 3700.530 kb on - strand, within Dsui_3442
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,695,325 - Dsui_3439 0.61 +0.3 3,695,611 + Dsui_3439 0.78 -2.3 3,695,660 + Dsui_3439 0.81 -1.3 3,695,683 - Dsui_3439 0.83 +0.1 3,695,684 - Dsui_3439 0.83 -0.2 3,695,730 + Dsui_3439 0.86 -0.3 3,695,820 - -0.6 3,695,925 + +0.7 3,696,036 - -0.3 3,696,115 + +0.7 3,696,167 - Dsui_3440 0.35 -0.3 3,696,255 - Dsui_3440 0.77 -1.6 3,696,298 - -0.9 3,696,313 + -1.3 3,696,529 - -2.1 3,696,559 + -0.3 3,696,612 - -0.9 3,696,679 + +0.7 3,696,716 - Dsui_3441 0.13 -0.9 3,696,751 - Dsui_3441 0.14 -0.9 3,696,839 - Dsui_3441 0.17 -0.9 3,696,885 + Dsui_3441 0.18 +0.7 3,696,988 - +0.7 3,697,092 - Dsui_3441 0.24 +0.7 3,697,306 + Dsui_3441 0.31 -0.9 3,697,309 - Dsui_3441 0.31 -2.6 3,697,421 + Dsui_3441 0.35 -0.3 3,697,564 + Dsui_3441 0.39 -2.1 3,697,743 + Dsui_3441 0.44 -0.9 3,697,751 - Dsui_3441 0.45 -2.9 3,698,083 - +0.7 3,698,083 - +0.7 3,698,139 - Dsui_3441 0.57 +0.7 3,698,304 - +0.7 3,698,341 + Dsui_3441 0.63 -1.6 3,698,598 - Dsui_3441 0.71 +0.7 3,698,720 - Dsui_3441 0.74 -2.3 3,698,722 + Dsui_3441 0.75 +0.7 3,698,730 - Dsui_3441 0.75 -0.3 3,698,836 + +0.7 3,698,880 - Dsui_3441 0.79 -0.9 3,699,169 + +0.7 3,699,315 - -0.9 3,699,415 - -0.3 3,699,555 + -0.3 3,699,606 + +0.7 3,699,686 + +0.7 3,699,751 - +0.7 3,699,833 - Dsui_3442 0.20 -0.9 3,699,895 + +0.7 3,700,034 - +0.7 3,700,046 - Dsui_3442 0.37 -0.3 3,700,169 - Dsui_3442 0.46 -1.3 3,700,184 - +0.7 3,700,227 - Dsui_3442 0.51 -0.9 3,700,257 + Dsui_3442 0.53 +0.7 3,700,265 - Dsui_3442 0.54 -0.3 3,700,286 - Dsui_3442 0.56 +0.7 3,700,302 - Dsui_3442 0.57 -1.3 3,700,302 - Dsui_3442 0.57 -0.3 3,700,404 + Dsui_3442 0.65 -0.9 3,700,530 - Dsui_3442 0.75 -0.1
Or see this region's nucleotide sequence