Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3409 and Dsui_3410 are separated by 68 nucleotides Dsui_3410 and Dsui_3411 are separated by 21 nucleotides Dsui_3411 and Dsui_3412 are separated by 61 nucleotides Dsui_3412 and Dsui_3413 are separated by 6 nucleotides
Dsui_3409: Dsui_3409 - hypothetical protein, at 3,662,580 to 3,663,146
_3409
Dsui_3410: Dsui_3410 - serine/threonine protein phosphatase, at 3,663,215 to 3,663,955
_3410
Dsui_3411: Dsui_3411 - hypothetical protein, at 3,663,977 to 3,664,288
_3411
Dsui_3412: Dsui_3412 - putative signal transduction protein, at 3,664,350 to 3,665,246
_3412
Dsui_3413: Dsui_3413 - Fe-S oxidoreductase, at 3,665,253 to 3,666,515
_3413
Position (kb)
3663
3664
3665 Strain fitness (log2 ratio)
-2
-1
0
1 at 3663.000 kb on + strand, within Dsui_3409 at 3663.008 kb on - strand, within Dsui_3409 at 3663.015 kb on + strand at 3663.083 kb on + strand, within Dsui_3409 at 3663.105 kb on + strand at 3663.113 kb on - strand at 3663.213 kb on + strand at 3663.243 kb on + strand at 3663.248 kb on + strand at 3663.267 kb on - strand at 3663.267 kb on - strand at 3663.448 kb on + strand, within Dsui_3410 at 3663.493 kb on + strand, within Dsui_3410 at 3663.501 kb on - strand, within Dsui_3410 at 3663.544 kb on - strand, within Dsui_3410 at 3663.546 kb on + strand, within Dsui_3410 at 3663.551 kb on + strand, within Dsui_3410 at 3663.656 kb on - strand, within Dsui_3410 at 3663.661 kb on - strand, within Dsui_3410 at 3663.669 kb on - strand, within Dsui_3410 at 3663.746 kb on - strand, within Dsui_3410 at 3663.845 kb on + strand at 3663.981 kb on - strand at 3664.000 kb on - strand at 3664.062 kb on - strand, within Dsui_3411 at 3664.155 kb on + strand, within Dsui_3411 at 3664.163 kb on - strand, within Dsui_3411 at 3664.204 kb on + strand, within Dsui_3411 at 3664.214 kb on + strand, within Dsui_3411 at 3664.248 kb on - strand, within Dsui_3411 at 3664.291 kb on - strand at 3664.291 kb on - strand at 3664.294 kb on - strand at 3664.307 kb on - strand at 3664.345 kb on - strand at 3664.356 kb on - strand at 3664.397 kb on - strand at 3664.449 kb on + strand at 3664.457 kb on - strand, within Dsui_3412 at 3664.481 kb on + strand, within Dsui_3412 at 3664.522 kb on - strand, within Dsui_3412 at 3664.602 kb on + strand, within Dsui_3412 at 3664.667 kb on + strand at 3664.672 kb on + strand, within Dsui_3412 at 3664.798 kb on + strand, within Dsui_3412 at 3664.850 kb on - strand, within Dsui_3412 at 3664.873 kb on + strand, within Dsui_3412 at 3664.881 kb on - strand, within Dsui_3412 at 3664.917 kb on + strand, within Dsui_3412 at 3664.922 kb on + strand, within Dsui_3412 at 3664.936 kb on - strand, within Dsui_3412 at 3664.940 kb on + strand, within Dsui_3412 at 3664.948 kb on - strand, within Dsui_3412 at 3664.989 kb on + strand, within Dsui_3412 at 3665.007 kb on + strand, within Dsui_3412 at 3665.010 kb on - strand, within Dsui_3412 at 3665.025 kb on - strand, within Dsui_3412 at 3665.113 kb on + strand at 3665.157 kb on - strand at 3665.204 kb on - strand at 3665.217 kb on - strand at 3665.231 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,663,000 + Dsui_3409 0.74 -0.3 3,663,008 - Dsui_3409 0.75 +0.7 3,663,015 + +0.7 3,663,083 + Dsui_3409 0.89 -1.9 3,663,105 + -0.3 3,663,113 - -1.9 3,663,213 + -2.3 3,663,243 + +0.7 3,663,248 + -0.3 3,663,267 - -0.6 3,663,267 - -0.4 3,663,448 + Dsui_3410 0.31 +0.7 3,663,493 + Dsui_3410 0.38 +0.7 3,663,501 - Dsui_3410 0.39 +0.2 3,663,544 - Dsui_3410 0.44 +0.2 3,663,546 + Dsui_3410 0.45 +0.7 3,663,551 + Dsui_3410 0.45 -1.9 3,663,656 - Dsui_3410 0.60 -0.2 3,663,661 - Dsui_3410 0.60 -0.2 3,663,669 - Dsui_3410 0.61 +0.4 3,663,746 - Dsui_3410 0.72 +0.2 3,663,845 + +0.7 3,663,981 - +0.1 3,664,000 - -0.3 3,664,062 - Dsui_3411 0.27 -0.3 3,664,155 + Dsui_3411 0.57 -1.3 3,664,163 - Dsui_3411 0.60 +0.5 3,664,204 + Dsui_3411 0.73 +0.7 3,664,214 + Dsui_3411 0.76 +0.7 3,664,248 - Dsui_3411 0.87 -0.5 3,664,291 - -0.1 3,664,291 - -0.3 3,664,294 - +0.6 3,664,307 - +0.3 3,664,345 - -0.2 3,664,356 - -0.4 3,664,397 - -0.9 3,664,449 + -0.3 3,664,457 - Dsui_3412 0.12 -0.3 3,664,481 + Dsui_3412 0.15 -1.9 3,664,522 - Dsui_3412 0.19 +0.6 3,664,602 + Dsui_3412 0.28 -1.6 3,664,667 + +0.7 3,664,672 + Dsui_3412 0.36 -0.3 3,664,798 + Dsui_3412 0.50 +0.7 3,664,850 - Dsui_3412 0.56 +0.3 3,664,873 + Dsui_3412 0.58 +0.7 3,664,881 - Dsui_3412 0.59 -0.0 3,664,917 + Dsui_3412 0.63 -0.3 3,664,922 + Dsui_3412 0.64 -1.3 3,664,936 - Dsui_3412 0.65 +0.7 3,664,940 + Dsui_3412 0.66 -1.6 3,664,948 - Dsui_3412 0.67 -0.1 3,664,989 + Dsui_3412 0.71 -0.9 3,665,007 + Dsui_3412 0.73 +0.7 3,665,010 - Dsui_3412 0.74 -0.1 3,665,025 - Dsui_3412 0.75 +0.0 3,665,113 + +0.7 3,665,157 - -0.3 3,665,204 - -0.4 3,665,217 - +0.6 3,665,231 + -0.9
Or see this region's nucleotide sequence