Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3303 and Dsui_3304 are separated by 1 nucleotides Dsui_3304 and Dsui_3305 overlap by 4 nucleotides
Dsui_3303: Dsui_3303 - ferredoxin-type protein, NapH/MauN family, at 3,544,891 to 3,545,856
_3303
Dsui_3304: Dsui_3304 - NADH:ubiquinone oxidoreductase chain I-like protein, at 3,545,858 to 3,546,730
_3304
Dsui_3305: Dsui_3305 - parallel beta-helix repeat (two copies), at 3,546,727 to 3,548,118
_3305
Position (kb)
3545
3546
3547 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3544.879 kb on + strand at 3544.898 kb on + strand at 3544.911 kb on - strand at 3544.911 kb on - strand at 3544.932 kb on - strand at 3544.993 kb on - strand, within Dsui_3303 at 3545.053 kb on - strand, within Dsui_3303 at 3545.088 kb on + strand, within Dsui_3303 at 3545.124 kb on + strand, within Dsui_3303 at 3545.137 kb on - strand, within Dsui_3303 at 3545.142 kb on - strand, within Dsui_3303 at 3545.226 kb on + strand at 3545.254 kb on - strand, within Dsui_3303 at 3545.293 kb on + strand at 3545.452 kb on - strand, within Dsui_3303 at 3545.516 kb on + strand, within Dsui_3303 at 3545.516 kb on - strand, within Dsui_3303 at 3545.568 kb on + strand at 3545.576 kb on - strand, within Dsui_3303 at 3545.576 kb on - strand, within Dsui_3303 at 3545.576 kb on - strand, within Dsui_3303 at 3545.608 kb on - strand, within Dsui_3303 at 3545.624 kb on + strand at 3545.649 kb on + strand, within Dsui_3303 at 3545.652 kb on - strand, within Dsui_3303 at 3545.711 kb on + strand, within Dsui_3303 at 3545.717 kb on - strand, within Dsui_3303 at 3545.717 kb on - strand, within Dsui_3303 at 3545.811 kb on + strand at 3545.822 kb on + strand at 3545.878 kb on - strand at 3546.069 kb on - strand, within Dsui_3304 at 3546.069 kb on - strand, within Dsui_3304 at 3546.107 kb on + strand, within Dsui_3304 at 3546.115 kb on - strand, within Dsui_3304 at 3546.115 kb on - strand, within Dsui_3304 at 3546.160 kb on - strand, within Dsui_3304 at 3546.168 kb on + strand, within Dsui_3304 at 3546.168 kb on + strand, within Dsui_3304 at 3546.168 kb on + strand, within Dsui_3304 at 3546.181 kb on - strand, within Dsui_3304 at 3546.191 kb on + strand, within Dsui_3304 at 3546.202 kb on + strand, within Dsui_3304 at 3546.210 kb on - strand, within Dsui_3304 at 3546.212 kb on + strand, within Dsui_3304 at 3546.220 kb on - strand, within Dsui_3304 at 3546.300 kb on - strand, within Dsui_3304 at 3546.300 kb on - strand, within Dsui_3304 at 3546.300 kb on - strand, within Dsui_3304 at 3546.360 kb on + strand at 3546.427 kb on - strand, within Dsui_3304 at 3546.438 kb on - strand, within Dsui_3304 at 3546.440 kb on - strand, within Dsui_3304 at 3546.587 kb on + strand, within Dsui_3304 at 3546.601 kb on + strand, within Dsui_3304 at 3546.652 kb on - strand at 3546.662 kb on - strand at 3546.708 kb on - strand at 3546.742 kb on - strand at 3546.801 kb on - strand at 3546.867 kb on - strand, within Dsui_3305 at 3546.904 kb on - strand, within Dsui_3305 at 3546.948 kb on + strand at 3547.025 kb on + strand, within Dsui_3305 at 3547.041 kb on + strand, within Dsui_3305 at 3547.297 kb on - strand, within Dsui_3305 at 3547.303 kb on - strand, within Dsui_3305 at 3547.305 kb on + strand, within Dsui_3305 at 3547.374 kb on + strand, within Dsui_3305 at 3547.423 kb on - strand, within Dsui_3305 at 3547.527 kb on + strand, within Dsui_3305 at 3547.581 kb on + strand, within Dsui_3305 at 3547.650 kb on + strand, within Dsui_3305 at 3547.650 kb on + strand, within Dsui_3305 at 3547.650 kb on + strand, within Dsui_3305 at 3547.658 kb on - strand, within Dsui_3305 at 3547.706 kb on - strand, within Dsui_3305 at 3547.721 kb on - strand, within Dsui_3305 at 3547.721 kb on - strand, within Dsui_3305
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,544,879 + -0.2 3,544,898 + +0.8 3,544,911 - -0.5 3,544,911 - +0.6 3,544,932 - -0.4 3,544,993 - Dsui_3303 0.11 -0.1 3,545,053 - Dsui_3303 0.17 -0.1 3,545,088 + Dsui_3303 0.20 -0.8 3,545,124 + Dsui_3303 0.24 +0.8 3,545,137 - Dsui_3303 0.25 +1.5 3,545,142 - Dsui_3303 0.26 +1.1 3,545,226 + -0.2 3,545,254 - Dsui_3303 0.38 +0.1 3,545,293 + +0.8 3,545,452 - Dsui_3303 0.58 -0.1 3,545,516 + Dsui_3303 0.65 -1.2 3,545,516 - Dsui_3303 0.65 -0.6 3,545,568 + +0.8 3,545,576 - Dsui_3303 0.71 -0.3 3,545,576 - Dsui_3303 0.71 +0.4 3,545,576 - Dsui_3303 0.71 +0.1 3,545,608 - Dsui_3303 0.74 -0.2 3,545,624 + -0.2 3,545,649 + Dsui_3303 0.78 +0.8 3,545,652 - Dsui_3303 0.79 -0.2 3,545,711 + Dsui_3303 0.85 -0.2 3,545,717 - Dsui_3303 0.86 +1.8 3,545,717 - Dsui_3303 0.86 -1.2 3,545,811 + +0.8 3,545,822 + -0.2 3,545,878 - -0.2 3,546,069 - Dsui_3304 0.24 -0.3 3,546,069 - Dsui_3304 0.24 -0.2 3,546,107 + Dsui_3304 0.29 -2.0 3,546,115 - Dsui_3304 0.29 +0.5 3,546,115 - Dsui_3304 0.29 -1.6 3,546,160 - Dsui_3304 0.35 +0.8 3,546,168 + Dsui_3304 0.36 -0.2 3,546,168 + Dsui_3304 0.36 +0.8 3,546,168 + Dsui_3304 0.36 -0.2 3,546,181 - Dsui_3304 0.37 +0.8 3,546,191 + Dsui_3304 0.38 -0.2 3,546,202 + Dsui_3304 0.39 -1.8 3,546,210 - Dsui_3304 0.40 +0.1 3,546,212 + Dsui_3304 0.41 -0.8 3,546,220 - Dsui_3304 0.41 -0.1 3,546,300 - Dsui_3304 0.51 -0.1 3,546,300 - Dsui_3304 0.51 -0.4 3,546,300 - Dsui_3304 0.51 -0.7 3,546,360 + +0.8 3,546,427 - Dsui_3304 0.65 +0.0 3,546,438 - Dsui_3304 0.66 -0.2 3,546,440 - Dsui_3304 0.67 +0.1 3,546,587 + Dsui_3304 0.84 +0.8 3,546,601 + Dsui_3304 0.85 +1.8 3,546,652 - -0.6 3,546,662 - -0.3 3,546,708 - +0.4 3,546,742 - -0.6 3,546,801 - -0.4 3,546,867 - Dsui_3305 0.10 -0.3 3,546,904 - Dsui_3305 0.13 +0.3 3,546,948 + +0.8 3,547,025 + Dsui_3305 0.21 -1.6 3,547,041 + Dsui_3305 0.23 -0.2 3,547,297 - Dsui_3305 0.41 +0.2 3,547,303 - Dsui_3305 0.41 -0.6 3,547,305 + Dsui_3305 0.42 +0.8 3,547,374 + Dsui_3305 0.46 -0.2 3,547,423 - Dsui_3305 0.50 -0.1 3,547,527 + Dsui_3305 0.57 -1.6 3,547,581 + Dsui_3305 0.61 -1.8 3,547,650 + Dsui_3305 0.66 -2.7 3,547,650 + Dsui_3305 0.66 -0.2 3,547,650 + Dsui_3305 0.66 -0.8 3,547,658 - Dsui_3305 0.67 -1.7 3,547,706 - Dsui_3305 0.70 -0.4 3,547,721 - Dsui_3305 0.71 -0.8 3,547,721 - Dsui_3305 0.71 +0.2
Or see this region's nucleotide sequence