Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3290 and Dsui_3291 overlap by 4 nucleotides Dsui_3291 and Dsui_3292 are separated by 93 nucleotides Dsui_3292 and Dsui_3293 overlap by 62 nucleotides Dsui_3293 and Dsui_3294 are separated by 1 nucleotides
Dsui_3290: Dsui_3290 - 4-hydroxybenzoate synthetase (chorismate lyase), at 3,531,626 to 3,532,171
_3290
Dsui_3291: Dsui_3291 - hypothetical protein, at 3,532,168 to 3,532,626
_3291
Dsui_3292: Dsui_3292 - hypothetical protein, at 3,532,720 to 3,532,878
_3292
Dsui_3293: Dsui_3293 - pseudouridine synthase family protein, at 3,532,817 to 3,533,482
_3293
Dsui_3294: Dsui_3294 - isocitrate dehydrogenase kinase/phosphatase, at 3,533,484 to 3,535,331
_3294
Position (kb)
3532
3533 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3531.769 kb on + strand at 3531.898 kb on - strand, within Dsui_3290 at 3531.959 kb on - strand, within Dsui_3290 at 3531.984 kb on - strand, within Dsui_3290 at 3531.991 kb on + strand, within Dsui_3290 at 3532.195 kb on - strand at 3532.203 kb on + strand at 3532.203 kb on + strand at 3532.306 kb on - strand, within Dsui_3291 at 3532.484 kb on + strand, within Dsui_3291 at 3532.492 kb on - strand, within Dsui_3291 at 3532.492 kb on - strand, within Dsui_3291 at 3532.527 kb on + strand at 3532.672 kb on - strand at 3532.674 kb on + strand at 3532.682 kb on - strand at 3532.848 kb on + strand at 3532.848 kb on + strand at 3532.856 kb on - strand at 3532.856 kb on - strand at 3533.028 kb on - strand, within Dsui_3293 at 3533.033 kb on - strand, within Dsui_3293 at 3533.128 kb on - strand, within Dsui_3293 at 3533.169 kb on - strand at 3533.174 kb on - strand, within Dsui_3293 at 3533.179 kb on - strand, within Dsui_3293 at 3533.250 kb on + strand, within Dsui_3293 at 3533.250 kb on + strand, within Dsui_3293 at 3533.258 kb on - strand, within Dsui_3293 at 3533.299 kb on - strand, within Dsui_3293 at 3533.349 kb on - strand, within Dsui_3293 at 3533.378 kb on - strand, within Dsui_3293 at 3533.389 kb on + strand at 3533.389 kb on + strand at 3533.448 kb on + strand at 3533.531 kb on + strand at 3533.539 kb on - strand at 3533.620 kb on - strand at 3533.642 kb on - strand at 3533.743 kb on - strand, within Dsui_3294 at 3533.758 kb on - strand, within Dsui_3294 at 3533.860 kb on - strand, within Dsui_3294
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,531,769 + -0.2 3,531,898 - Dsui_3290 0.50 +0.9 3,531,959 - Dsui_3290 0.61 +1.0 3,531,984 - Dsui_3290 0.66 +0.5 3,531,991 + Dsui_3290 0.67 -1.8 3,532,195 - -0.5 3,532,203 + +0.8 3,532,203 + -0.8 3,532,306 - Dsui_3291 0.30 -0.6 3,532,484 + Dsui_3291 0.69 +0.8 3,532,492 - Dsui_3291 0.71 -0.4 3,532,492 - Dsui_3291 0.71 -0.8 3,532,527 + +0.8 3,532,672 - +0.4 3,532,674 + +0.8 3,532,682 - -0.1 3,532,848 + +0.8 3,532,848 + +0.8 3,532,856 - -0.2 3,532,856 - +0.1 3,533,028 - Dsui_3293 0.32 +0.9 3,533,033 - Dsui_3293 0.32 +0.2 3,533,128 - Dsui_3293 0.47 -0.2 3,533,169 - +0.8 3,533,174 - Dsui_3293 0.54 +0.8 3,533,179 - Dsui_3293 0.54 -1.6 3,533,250 + Dsui_3293 0.65 -2.0 3,533,250 + Dsui_3293 0.65 +0.3 3,533,258 - Dsui_3293 0.66 -0.8 3,533,299 - Dsui_3293 0.72 +1.8 3,533,349 - Dsui_3293 0.80 +0.8 3,533,378 - Dsui_3293 0.84 +0.8 3,533,389 + -0.2 3,533,389 + +0.8 3,533,448 + +0.8 3,533,531 + +0.8 3,533,539 - -1.6 3,533,620 - -0.2 3,533,642 - +0.8 3,533,743 - Dsui_3294 0.14 +0.8 3,533,758 - Dsui_3294 0.15 +0.2 3,533,860 - Dsui_3294 0.20 -1.8
Or see this region's nucleotide sequence