Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3218 and Dsui_3219 are separated by 113 nucleotides Dsui_3219 and Dsui_3220 are separated by 102 nucleotides Dsui_3220 and Dsui_3221 are separated by 110 nucleotides Dsui_3221 and Dsui_3222 are separated by 39 nucleotides
Dsui_3218: Dsui_3218 - transcription termination factor Rho, at 3,456,586 to 3,457,848
_3218
Dsui_3219: Dsui_3219 - ribosomal protein L31, at 3,457,962 to 3,458,177
_3219
Dsui_3220: Dsui_3220 - PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase, at 3,458,280 to 3,459,923
_3220
Dsui_3221: Dsui_3221 - cytochrome c553, at 3,460,034 to 3,460,720
_3221
Dsui_3222: Dsui_3222 - oligoribonuclease (3'->5' exoribonuclease), at 3,460,760 to 3,461,305
_3222
Position (kb)
3458
3459
3460 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3458.266 kb on - strand at 3458.938 kb on + strand, within Dsui_3220 at 3458.991 kb on + strand, within Dsui_3220 at 3459.380 kb on + strand, within Dsui_3220 at 3459.504 kb on + strand, within Dsui_3220 at 3459.916 kb on - strand at 3459.974 kb on + strand at 3459.985 kb on + strand at 3460.030 kb on - strand at 3460.032 kb on + strand at 3460.040 kb on - strand at 3460.040 kb on - strand at 3460.113 kb on - strand, within Dsui_3221 at 3460.302 kb on + strand, within Dsui_3221 at 3460.302 kb on + strand, within Dsui_3221 at 3460.314 kb on + strand, within Dsui_3221 at 3460.356 kb on + strand at 3460.401 kb on - strand, within Dsui_3221 at 3460.444 kb on - strand, within Dsui_3221 at 3460.498 kb on - strand, within Dsui_3221 at 3460.660 kb on + strand at 3460.673 kb on + strand at 3460.673 kb on + strand at 3460.680 kb on + strand at 3460.688 kb on - strand at 3460.722 kb on + strand at 3460.726 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,458,266 - +0.8 3,458,938 + Dsui_3220 0.40 -2.7 3,458,991 + Dsui_3220 0.43 -2.9 3,459,380 + Dsui_3220 0.67 -4.7 3,459,504 + Dsui_3220 0.74 -3.1 3,459,916 - +0.8 3,459,974 + -1.1 3,459,985 + -0.6 3,460,030 - -0.5 3,460,032 + +0.8 3,460,040 - +0.5 3,460,040 - -0.7 3,460,113 - Dsui_3221 0.11 +0.5 3,460,302 + Dsui_3221 0.39 -1.6 3,460,302 + Dsui_3221 0.39 -0.2 3,460,314 + Dsui_3221 0.41 -1.2 3,460,356 + -0.2 3,460,401 - Dsui_3221 0.53 -0.3 3,460,444 - Dsui_3221 0.60 +0.3 3,460,498 - Dsui_3221 0.68 -0.6 3,460,660 + +0.8 3,460,673 + -0.2 3,460,673 + -0.2 3,460,680 + -1.6 3,460,688 - -0.4 3,460,722 + +0.8 3,460,726 + +0.8
Or see this region's nucleotide sequence