Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3204 and Dsui_3205 are separated by 90 nucleotides Dsui_3205 and Dsui_3206 are separated by 80 nucleotides Dsui_3206 and Dsui_3207 overlap by 7 nucleotides
Dsui_3204: Dsui_3204 - chorismate synthase, at 3,439,885 to 3,440,991
_3204
Dsui_3205: Dsui_3205 - pseudouridine synthase, RluA family, at 3,441,082 to 3,441,735
_3205
Dsui_3206: Dsui_3206 - putative metal-binding protein, at 3,441,816 to 3,442,232
_3206
Dsui_3207: Dsui_3207 - ankyrin repeat-containing protein, at 3,442,226 to 3,442,738
_3207
Position (kb)
3441
3442 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3441.044 kb on - strand at 3441.175 kb on - strand, within Dsui_3205 at 3441.175 kb on - strand, within Dsui_3205 at 3441.181 kb on - strand, within Dsui_3205 at 3441.186 kb on - strand, within Dsui_3205 at 3441.339 kb on - strand, within Dsui_3205 at 3441.396 kb on - strand, within Dsui_3205 at 3441.396 kb on - strand, within Dsui_3205 at 3441.534 kb on + strand at 3441.534 kb on + strand, within Dsui_3205 at 3441.557 kb on - strand, within Dsui_3205 at 3441.574 kb on - strand, within Dsui_3205 at 3441.614 kb on + strand at 3441.694 kb on - strand at 3441.697 kb on + strand at 3441.697 kb on + strand at 3441.781 kb on - strand at 3441.942 kb on + strand, within Dsui_3206 at 3442.073 kb on + strand, within Dsui_3206 at 3442.081 kb on - strand, within Dsui_3206 at 3442.083 kb on - strand, within Dsui_3206 at 3442.089 kb on - strand, within Dsui_3206 at 3442.159 kb on + strand at 3442.167 kb on - strand, within Dsui_3206 at 3442.484 kb on - strand, within Dsui_3207 at 3442.513 kb on + strand at 3442.522 kb on - strand, within Dsui_3207 at 3442.613 kb on + strand at 3442.621 kb on - strand, within Dsui_3207 at 3442.695 kb on + strand at 3442.728 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,441,044 - -1.2 3,441,175 - Dsui_3205 0.14 +0.3 3,441,175 - Dsui_3205 0.14 -0.7 3,441,181 - Dsui_3205 0.15 +0.8 3,441,186 - Dsui_3205 0.16 -0.3 3,441,339 - Dsui_3205 0.39 +0.5 3,441,396 - Dsui_3205 0.48 +0.1 3,441,396 - Dsui_3205 0.48 +0.1 3,441,534 + +0.8 3,441,534 + Dsui_3205 0.69 -1.8 3,441,557 - Dsui_3205 0.73 +0.2 3,441,574 - Dsui_3205 0.75 -0.1 3,441,614 + +0.8 3,441,694 - +0.3 3,441,697 + +0.8 3,441,697 + -0.2 3,441,781 - +1.8 3,441,942 + Dsui_3206 0.30 -0.8 3,442,073 + Dsui_3206 0.62 -1.2 3,442,081 - Dsui_3206 0.64 -0.3 3,442,083 - Dsui_3206 0.64 -0.4 3,442,089 - Dsui_3206 0.65 -1.4 3,442,159 + -1.2 3,442,167 - Dsui_3206 0.84 +1.0 3,442,484 - Dsui_3207 0.50 -0.5 3,442,513 + -0.2 3,442,522 - Dsui_3207 0.58 +0.5 3,442,613 + -0.2 3,442,621 - Dsui_3207 0.77 +1.4 3,442,695 + -0.2 3,442,728 + -0.8
Or see this region's nucleotide sequence