Strain Fitness in Dechlorosoma suillum PS around Dsui_3176

Experiment: ALP with Fusidic 0.007 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3175 and Dsui_3176 overlap by 4 nucleotidesDsui_3176 and Dsui_3177 overlap by 4 nucleotidesDsui_3177 and Dsui_3178 overlap by 10 nucleotides Dsui_3175: Dsui_3175 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 3,405,366 to 3,406,901 _3175 Dsui_3176: Dsui_3176 - RND family efflux transporter, MFP subunit, at 3,406,898 to 3,408,184 _3176 Dsui_3177: Dsui_3177 - ABC-type antimicrobial peptide transport system, ATPase component, at 3,408,181 to 3,408,909 _3177 Dsui_3178: Dsui_3178 - ABC-type antimicrobial peptide transport system, permease component, at 3,408,900 to 3,410,111 _3178 Position (kb) 3406 3407 3408 3409Strain fitness (log2 ratio) -2 -1 0 1at 3405.909 kb on - strandat 3405.929 kb on + strandat 3405.962 kb on + strand, within Dsui_3175at 3406.105 kb on - strandat 3406.515 kb on + strand, within Dsui_3175at 3406.711 kb on + strandat 3406.779 kb on + strandat 3406.834 kb on + strandat 3406.871 kb on + strandat 3406.883 kb on + strandat 3406.984 kb on + strandat 3407.485 kb on + strand, within Dsui_3176at 3407.496 kb on + strandat 3407.619 kb on + strand, within Dsui_3176at 3408.046 kb on - strandat 3408.087 kb on + strandat 3408.159 kb on + strandat 3408.399 kb on + strandat 3408.407 kb on - strandat 3408.516 kb on - strand, within Dsui_3177at 3408.518 kb on + strand, within Dsui_3177at 3408.791 kb on - strand, within Dsui_3177at 3408.925 kb on - strandat 3408.974 kb on + strandat 3408.977 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
remove
3,405,909 - +0.7
3,405,929 + +0.7
3,405,962 + Dsui_3175 0.39 -1.6
3,406,105 - +0.7
3,406,515 + Dsui_3175 0.75 -2.1
3,406,711 + -0.8
3,406,779 + +0.7
3,406,834 + -1.3
3,406,871 + -0.3
3,406,883 + -0.3
3,406,984 + -2.1
3,407,485 + Dsui_3176 0.46 +0.7
3,407,496 + +0.7
3,407,619 + Dsui_3176 0.56 +0.7
3,408,046 - -0.3
3,408,087 + -0.3
3,408,159 + +0.7
3,408,399 + -0.3
3,408,407 - +0.7
3,408,516 - Dsui_3177 0.46 -0.8
3,408,518 + Dsui_3177 0.46 +0.7
3,408,791 - Dsui_3177 0.84 +0.2
3,408,925 - -0.8
3,408,974 + +0.7
3,408,977 - +0.7

Or see this region's nucleotide sequence