Strain Fitness in Dechlorosoma suillum PS around Dsui_3133

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3132 and Dsui_3133 overlap by 4 nucleotidesDsui_3133 and Dsui_3134 are separated by 20 nucleotidesDsui_3134 and Dsui_3135 are separated by 12 nucleotides Dsui_3132: Dsui_3132 - ATP phosphoribosyltransferase, regulatory subunit, at 3,354,664 to 3,355,818 _3132 Dsui_3133: Dsui_3133 - hypothetical protein, at 3,355,815 to 3,356,000 _3133 Dsui_3134: Dsui_3134 - membrane protease subunit, stomatin/prohibitin, at 3,356,021 to 3,356,899 _3134 Dsui_3135: Dsui_3135 - HflK protein, at 3,356,912 to 3,358,186 _3135 Position (kb) 3355 3356 3357Strain fitness (log2 ratio) -1 0 1at 3355.883 kb on - strand, within Dsui_3133at 3356.348 kb on - strand, within Dsui_3134at 3356.735 kb on - strand, within Dsui_3134at 3356.908 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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3,355,883 - Dsui_3133 0.37 +0.6
3,356,348 - Dsui_3134 0.37 +0.8
3,356,735 - Dsui_3134 0.81 +0.8
3,356,908 - -0.7

Or see this region's nucleotide sequence