Strain Fitness in Dechlorosoma suillum PS around Dsui_3115

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3113 and Dsui_3114 are separated by 96 nucleotidesDsui_3114 and Dsui_3115 overlap by 14 nucleotidesDsui_3115 and Dsui_3116 overlap by 1 nucleotidesDsui_3116 and Dsui_3117 are separated by 9 nucleotides Dsui_3113: Dsui_3113 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,334,788 to 3,337,169 _3113 Dsui_3114: Dsui_3114 - heme/copper-type cytochrome/quinol oxidase, subunit 3, at 3,337,266 to 3,337,868 _3114 Dsui_3115: Dsui_3115 - hypothetical protein, at 3,337,855 to 3,338,169 _3115 Dsui_3116: Dsui_3116 - ATPase family protein associated with various cellular activities (AAA), at 3,338,169 to 3,338,960 _3116 Dsui_3117: Dsui_3117 - hypothetical protein, at 3,338,970 to 3,339,374 _3117 Position (kb) 3337 3338 3339Strain fitness (log2 ratio) -2 -1 0 1at 3336.895 kb on + strand, within Dsui_3113at 3336.903 kb on + strand, within Dsui_3113at 3336.956 kb on + strandat 3336.956 kb on + strandat 3336.991 kb on + strandat 3337.050 kb on + strandat 3337.060 kb on + strandat 3337.164 kb on + strandat 3337.383 kb on + strand, within Dsui_3114at 3337.413 kb on + strand, within Dsui_3114at 3337.426 kb on - strandat 3337.445 kb on - strandat 3337.468 kb on - strandat 3337.518 kb on + strand, within Dsui_3114at 3337.784 kb on - strand, within Dsui_3114at 3337.825 kb on - strandat 3337.850 kb on + strandat 3337.860 kb on - strandat 3337.965 kb on + strand, within Dsui_3115at 3338.083 kb on + strand, within Dsui_3115at 3338.099 kb on + strandat 3338.469 kb on - strandat 3338.760 kb on + strandat 3338.975 kb on - strandat 3338.975 kb on - strandat 3339.046 kb on - strand, within Dsui_3117at 3339.066 kb on + strand, within Dsui_3117at 3339.066 kb on + strand, within Dsui_3117at 3339.081 kb on + strand, within Dsui_3117

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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3,336,895 + Dsui_3113 0.88 +0.8
3,336,903 + Dsui_3113 0.89 +0.8
3,336,956 + -2.7
3,336,956 + -0.8
3,336,991 + -0.8
3,337,050 + -2.2
3,337,060 + +0.8
3,337,164 + -0.2
3,337,383 + Dsui_3114 0.19 -1.8
3,337,413 + Dsui_3114 0.24 -0.2
3,337,426 - -0.2
3,337,445 - -0.2
3,337,468 - +0.8
3,337,518 + Dsui_3114 0.42 -2.2
3,337,784 - Dsui_3114 0.86 -0.2
3,337,825 - -0.2
3,337,850 + +0.8
3,337,860 - -0.8
3,337,965 + Dsui_3115 0.35 -2.4
3,338,083 + Dsui_3115 0.72 -1.2
3,338,099 + +0.8
3,338,469 - -0.2
3,338,760 + +0.8
3,338,975 - -0.8
3,338,975 - +0.8
3,339,046 - Dsui_3117 0.19 -2.2
3,339,066 + Dsui_3117 0.24 +0.8
3,339,066 + Dsui_3117 0.24 -1.2
3,339,081 + Dsui_3117 0.27 -1.6

Or see this region's nucleotide sequence