Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3060 and Dsui_3061 are separated by 35 nucleotides Dsui_3061 and Dsui_3062 are separated by 16 nucleotides Dsui_3062 and Dsui_3063 are separated by 96 nucleotides Dsui_3063 and Dsui_3064 are separated by 69 nucleotides
Dsui_3060: Dsui_3060 - 23S rRNA methylase, at 3,276,038 to 3,276,670
_3060
Dsui_3061: Dsui_3061 - putative RNA-binding protein, YhbY family, at 3,276,706 to 3,277,062
_3061
Dsui_3062: Dsui_3062 - hypothetical protein, at 3,277,079 to 3,277,570
_3062
Dsui_3063: Dsui_3063 - transcription elongation factor GreA, at 3,277,667 to 3,278,143
_3063
Dsui_3064: Dsui_3064 - carbamoyl-phosphate synthase, large subunit, at 3,278,213 to 3,281,419
_3064
Position (kb)
3277
3278
3279 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3276.795 kb on + strand, within Dsui_3061 at 3276.803 kb on - strand, within Dsui_3061 at 3276.852 kb on + strand, within Dsui_3061 at 3276.860 kb on - strand, within Dsui_3061 at 3277.056 kb on + strand at 3277.090 kb on - strand at 3277.161 kb on - strand, within Dsui_3062 at 3277.161 kb on - strand, within Dsui_3062 at 3277.166 kb on + strand, within Dsui_3062 at 3277.174 kb on - strand, within Dsui_3062 at 3277.190 kb on + strand, within Dsui_3062 at 3277.370 kb on - strand, within Dsui_3062 at 3277.440 kb on + strand, within Dsui_3062 at 3277.443 kb on - strand, within Dsui_3062 at 3277.479 kb on - strand, within Dsui_3062 at 3277.519 kb on - strand, within Dsui_3062 at 3277.661 kb on - strand at 3277.709 kb on + strand at 3277.771 kb on - strand, within Dsui_3063 at 3277.864 kb on + strand, within Dsui_3063 at 3277.961 kb on - strand, within Dsui_3063 at 3278.078 kb on + strand, within Dsui_3063 at 3278.114 kb on + strand at 3278.115 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,276,795 + Dsui_3061 0.25 -0.1 3,276,803 - Dsui_3061 0.27 +1.0 3,276,852 + Dsui_3061 0.41 +0.7 3,276,860 - Dsui_3061 0.43 +2.3 3,277,056 + +0.4 3,277,090 - +0.3 3,277,161 - Dsui_3062 0.17 -0.3 3,277,161 - Dsui_3062 0.17 -0.1 3,277,166 + Dsui_3062 0.18 +0.6 3,277,174 - Dsui_3062 0.19 -0.3 3,277,190 + Dsui_3062 0.23 +0.8 3,277,370 - Dsui_3062 0.59 -0.3 3,277,440 + Dsui_3062 0.73 -0.2 3,277,443 - Dsui_3062 0.74 -0.1 3,277,479 - Dsui_3062 0.81 -0.0 3,277,519 - Dsui_3062 0.89 -0.1 3,277,661 - -0.3 3,277,709 + -1.5 3,277,771 - Dsui_3063 0.22 -1.8 3,277,864 + Dsui_3063 0.41 -0.2 3,277,961 - Dsui_3063 0.62 -3.9 3,278,078 + Dsui_3063 0.86 -0.2 3,278,114 + +0.8 3,278,115 + -0.8
Or see this region's nucleotide sequence