Strain Fitness in Dechlorosoma suillum PS around Dsui_2989

Experiment: ALP with Fusidic 0.007 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2989 and Dsui_2990 are separated by 226 nucleotides Dsui_2989: Dsui_2989 - PAS domain S-box, at 3,195,656 to 3,197,752 _2989 Dsui_2990: Dsui_2990 - MoxR-like ATPase, at 3,197,979 to 3,198,827 _2990 Position (kb) 3195 3196 3197 3198Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3194.663 kb on + strandat 3194.793 kb on - strandat 3194.798 kb on - strandat 3195.091 kb on - strandat 3195.258 kb on + strandat 3195.266 kb on - strandat 3195.282 kb on + strandat 3195.303 kb on - strandat 3195.314 kb on - strandat 3195.392 kb on - strandat 3195.421 kb on - strandat 3195.421 kb on - strandat 3195.483 kb on - strandat 3195.562 kb on - strandat 3195.667 kb on + strandat 3195.675 kb on - strandat 3195.710 kb on - strandat 3195.750 kb on + strandat 3195.828 kb on - strandat 3195.911 kb on + strand, within Dsui_2989at 3195.959 kb on - strand, within Dsui_2989at 3195.967 kb on - strand, within Dsui_2989at 3196.288 kb on - strand, within Dsui_2989at 3196.304 kb on + strand, within Dsui_2989at 3196.408 kb on - strand, within Dsui_2989at 3196.473 kb on - strand, within Dsui_2989at 3196.525 kb on - strand, within Dsui_2989at 3196.609 kb on + strand, within Dsui_2989at 3196.617 kb on - strand, within Dsui_2989at 3196.638 kb on + strand, within Dsui_2989at 3196.801 kb on - strand, within Dsui_2989at 3196.875 kb on + strand, within Dsui_2989at 3196.875 kb on + strandat 3196.932 kb on + strandat 3196.968 kb on + strand, within Dsui_2989at 3196.997 kb on - strand, within Dsui_2989at 3196.997 kb on - strand, within Dsui_2989at 3197.447 kb on - strand, within Dsui_2989at 3197.462 kb on + strand, within Dsui_2989at 3197.530 kb on + strandat 3197.538 kb on - strand, within Dsui_2989at 3197.561 kb on - strandat 3197.590 kb on + strandat 3197.598 kb on - strandat 3197.598 kb on - strandat 3197.604 kb on - strandat 3197.609 kb on - strandat 3197.628 kb on + strandat 3197.709 kb on - strandat 3197.774 kb on - strandat 3197.822 kb on - strandat 3197.823 kb on - strandat 3197.823 kb on - strandat 3197.823 kb on - strandat 3197.873 kb on + strandat 3198.044 kb on - strandat 3198.069 kb on + strand, within Dsui_2990at 3198.074 kb on + strand, within Dsui_2990at 3198.077 kb on - strandat 3198.130 kb on + strand, within Dsui_2990at 3198.138 kb on - strand, within Dsui_2990at 3198.189 kb on - strandat 3198.199 kb on + strand, within Dsui_2990at 3198.315 kb on - strandat 3198.466 kb on + strand, within Dsui_2990at 3198.481 kb on + strand, within Dsui_2990at 3198.552 kb on + strand, within Dsui_2990at 3198.575 kb on + strand, within Dsui_2990at 3198.590 kb on - strand, within Dsui_2990at 3198.603 kb on - strandat 3198.660 kb on - strand, within Dsui_2990at 3198.721 kb on + strand, within Dsui_2990at 3198.749 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
remove
3,194,663 + -2.0
3,194,793 - +0.8
3,194,798 - -0.8
3,195,091 - +0.8
3,195,258 + -3.9
3,195,266 - +2.4
3,195,282 + +0.8
3,195,303 - -0.2
3,195,314 - -1.2
3,195,392 - -0.2
3,195,421 - -0.2
3,195,421 - -2.0
3,195,483 - +0.8
3,195,562 - -1.5
3,195,667 + +0.8
3,195,675 - -0.1
3,195,710 - -0.4
3,195,750 + -0.8
3,195,828 - +0.0
3,195,911 + Dsui_2989 0.12 +0.8
3,195,959 - Dsui_2989 0.14 -0.7
3,195,967 - Dsui_2989 0.15 +0.3
3,196,288 - Dsui_2989 0.30 +0.2
3,196,304 + Dsui_2989 0.31 -0.2
3,196,408 - Dsui_2989 0.36 -0.0
3,196,473 - Dsui_2989 0.39 -0.0
3,196,525 - Dsui_2989 0.41 +0.2
3,196,609 + Dsui_2989 0.45 -1.2
3,196,617 - Dsui_2989 0.46 -0.0
3,196,638 + Dsui_2989 0.47 -0.8
3,196,801 - Dsui_2989 0.55 -0.0
3,196,875 + Dsui_2989 0.58 +0.8
3,196,875 + +0.8
3,196,932 + +0.8
3,196,968 + Dsui_2989 0.63 -1.2
3,196,997 - Dsui_2989 0.64 +0.2
3,196,997 - Dsui_2989 0.64 +0.1
3,197,447 - Dsui_2989 0.85 +0.6
3,197,462 + Dsui_2989 0.86 -0.2
3,197,530 + -1.2
3,197,538 - Dsui_2989 0.90 +0.5
3,197,561 - +0.0
3,197,590 + -0.2
3,197,598 - -0.5
3,197,598 - +0.3
3,197,604 - -0.7
3,197,609 - -0.1
3,197,628 + +0.8
3,197,709 - +2.8
3,197,774 - +0.0
3,197,822 - -0.2
3,197,823 - -0.2
3,197,823 - -0.2
3,197,823 - +0.8
3,197,873 + -0.2
3,198,044 - +0.8
3,198,069 + Dsui_2990 0.11 +0.2
3,198,074 + Dsui_2990 0.11 +1.1
3,198,077 - -0.8
3,198,130 + Dsui_2990 0.18 -1.2
3,198,138 - Dsui_2990 0.19 +0.8
3,198,189 - +0.8
3,198,199 + Dsui_2990 0.26 +0.8
3,198,315 - +0.8
3,198,466 + Dsui_2990 0.57 -2.5
3,198,481 + Dsui_2990 0.59 -0.3
3,198,552 + Dsui_2990 0.67 -1.0
3,198,575 + Dsui_2990 0.70 +0.1
3,198,590 - Dsui_2990 0.72 -0.2
3,198,603 - +0.8
3,198,660 - Dsui_2990 0.80 -1.2
3,198,721 + Dsui_2990 0.87 +0.8
3,198,749 + -0.2

Or see this region's nucleotide sequence