Strain Fitness in Dechlorosoma suillum PS around Dsui_2979

Experiment: ALP with Fusidic 0.007 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2978 and Dsui_2979 are separated by 98 nucleotidesDsui_2979 and Dsui_2980 overlap by 1 nucleotidesDsui_2980 and Dsui_2981 are separated by 3 nucleotides Dsui_2978: Dsui_2978 - dihydroorotate dehydrogenase, subfamily 2, at 3,184,858 to 3,185,919 _2978 Dsui_2979: Dsui_2979 - electron transport complex, RnfABCDGE type, A subunit, at 3,186,018 to 3,186,605 _2979 Dsui_2980: Dsui_2980 - electron transport complex, RnfABCDGE type, B subunit, at 3,186,605 to 3,187,147 _2980 Dsui_2981: Dsui_2981 - electron transport complex, RnfABCDGE type, C subunit, at 3,187,151 to 3,188,932 _2981 Position (kb) 3186 3187Strain fitness (log2 ratio) -1 0 1 2 3at 3185.978 kb on - strandat 3186.207 kb on - strand, within Dsui_2979at 3186.241 kb on + strand, within Dsui_2979at 3186.624 kb on + strandat 3186.939 kb on + strand, within Dsui_2980at 3187.493 kb on + strand, within Dsui_2981

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml
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3,185,978 - -0.2
3,186,207 - Dsui_2979 0.32 -0.2
3,186,241 + Dsui_2979 0.38 +3.0
3,186,624 + +3.7
3,186,939 + Dsui_2980 0.62 +3.7
3,187,493 + Dsui_2981 0.19 +3.5

Or see this region's nucleotide sequence