Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2967 and Dsui_2968 overlap by 4 nucleotides Dsui_2968 and Dsui_2969 overlap by 4 nucleotides Dsui_2969 and Dsui_2970 are separated by 13 nucleotides Dsui_2970 and Dsui_2971 overlap by 4 nucleotides
Dsui_2967: Dsui_2967 - precorrin-3B C17-methyltransferase, at 3,174,272 to 3,175,267
_2967
Dsui_2968: Dsui_2968 - ferredoxin, at 3,175,264 to 3,175,602
_2968
Dsui_2969: Dsui_2969 - uroporphyrin-III C-methyltransferase, at 3,175,599 to 3,176,366
_2969
Dsui_2970: Dsui_2970 - putative Fe-S oxidoreductase, at 3,176,380 to 3,176,670
_2970
Dsui_2971: Dsui_2971 - putative esterase of the alpha-beta hydrolase superfamily, at 3,176,667 to 3,177,560
_2971
Position (kb)
3175
3176
3177 Strain fitness (log2 ratio)
-2
-1
0
1 at 3174.694 kb on - strand at 3174.777 kb on - strand at 3174.791 kb on + strand, within Dsui_2967 at 3174.796 kb on + strand, within Dsui_2967 at 3174.802 kb on + strand, within Dsui_2967 at 3174.805 kb on - strand at 3174.967 kb on + strand, within Dsui_2967 at 3175.014 kb on + strand, within Dsui_2967 at 3175.022 kb on - strand, within Dsui_2967 at 3175.028 kb on + strand, within Dsui_2967 at 3175.028 kb on + strand, within Dsui_2967 at 3175.036 kb on - strand, within Dsui_2967 at 3175.065 kb on - strand, within Dsui_2967 at 3175.115 kb on + strand, within Dsui_2967 at 3175.137 kb on - strand, within Dsui_2967 at 3175.243 kb on + strand at 3175.327 kb on - strand, within Dsui_2968 at 3175.336 kb on + strand, within Dsui_2968 at 3175.350 kb on + strand, within Dsui_2968 at 3175.360 kb on - strand at 3175.383 kb on + strand, within Dsui_2968 at 3175.391 kb on - strand, within Dsui_2968 at 3175.427 kb on - strand, within Dsui_2968 at 3175.520 kb on + strand, within Dsui_2968 at 3175.522 kb on - strand, within Dsui_2968 at 3175.597 kb on - strand at 3175.690 kb on + strand at 3175.713 kb on + strand, within Dsui_2969 at 3175.828 kb on + strand, within Dsui_2969 at 3175.975 kb on + strand, within Dsui_2969 at 3176.067 kb on + strand, within Dsui_2969 at 3176.102 kb on - strand, within Dsui_2969 at 3176.173 kb on + strand, within Dsui_2969 at 3176.253 kb on - strand, within Dsui_2969 at 3176.269 kb on + strand, within Dsui_2969 at 3176.406 kb on + strand at 3176.414 kb on - strand, within Dsui_2970 at 3176.436 kb on + strand, within Dsui_2970 at 3176.479 kb on - strand, within Dsui_2970 at 3176.526 kb on + strand, within Dsui_2970 at 3176.850 kb on + strand, within Dsui_2971 at 3176.858 kb on - strand, within Dsui_2971 at 3176.863 kb on + strand, within Dsui_2971 at 3176.935 kb on + strand at 3176.943 kb on - strand, within Dsui_2971 at 3177.060 kb on - strand, within Dsui_2971 at 3177.128 kb on + strand at 3177.198 kb on - strand, within Dsui_2971 at 3177.245 kb on + strand at 3177.245 kb on + strand, within Dsui_2971 at 3177.289 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,174,694 - +0.8 3,174,777 - +0.8 3,174,791 + Dsui_2967 0.52 +0.4 3,174,796 + Dsui_2967 0.53 -1.7 3,174,802 + Dsui_2967 0.53 +0.3 3,174,805 - -0.2 3,174,967 + Dsui_2967 0.70 +0.8 3,175,014 + Dsui_2967 0.74 +0.8 3,175,022 - Dsui_2967 0.75 -2.2 3,175,028 + Dsui_2967 0.76 +0.8 3,175,028 + Dsui_2967 0.76 -0.2 3,175,036 - Dsui_2967 0.77 -0.7 3,175,065 - Dsui_2967 0.80 -1.3 3,175,115 + Dsui_2967 0.85 +1.4 3,175,137 - Dsui_2967 0.87 -1.1 3,175,243 + +1.4 3,175,327 - Dsui_2968 0.19 -1.1 3,175,336 + Dsui_2968 0.21 -1.5 3,175,350 + Dsui_2968 0.25 -0.9 3,175,360 - +0.9 3,175,383 + Dsui_2968 0.35 +0.9 3,175,391 - Dsui_2968 0.37 +0.9 3,175,427 - Dsui_2968 0.48 -0.1 3,175,520 + Dsui_2968 0.76 +0.9 3,175,522 - Dsui_2968 0.76 -0.7 3,175,597 - -0.1 3,175,690 + +0.9 3,175,713 + Dsui_2969 0.15 -1.2 3,175,828 + Dsui_2969 0.30 -1.5 3,175,975 + Dsui_2969 0.49 -0.2 3,176,067 + Dsui_2969 0.61 -1.2 3,176,102 - Dsui_2969 0.65 -1.5 3,176,173 + Dsui_2969 0.75 -1.2 3,176,253 - Dsui_2969 0.85 +0.8 3,176,269 + Dsui_2969 0.87 -2.0 3,176,406 + -1.5 3,176,414 - Dsui_2970 0.12 +0.4 3,176,436 + Dsui_2970 0.19 +0.8 3,176,479 - Dsui_2970 0.34 -0.7 3,176,526 + Dsui_2970 0.50 -0.7 3,176,850 + Dsui_2971 0.20 -0.2 3,176,858 - Dsui_2971 0.21 -1.9 3,176,863 + Dsui_2971 0.22 -0.2 3,176,935 + +0.8 3,176,943 - Dsui_2971 0.31 -0.9 3,177,060 - Dsui_2971 0.44 +0.8 3,177,128 + -0.5 3,177,198 - Dsui_2971 0.59 +0.3 3,177,245 + -0.2 3,177,245 + Dsui_2971 0.65 +0.8 3,177,289 + +0.8
Or see this region's nucleotide sequence