Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2962 and Dsui_2963 overlap by 8 nucleotides Dsui_2963 and Dsui_2964 are separated by 3 nucleotides Dsui_2964 and Dsui_2965 are separated by 28 nucleotides
Dsui_2962: Dsui_2962 - cobalamin biosynthesis protein CbiD, at 3,169,727 to 3,170,923
_2962
Dsui_2963: Dsui_2963 - precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit,precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit, at 3,170,916 to 3,172,208
_2963
Dsui_2964: Dsui_2964 - precorrin-2 C20-methyltransferase, at 3,172,212 to 3,173,012
_2964
Dsui_2965: Dsui_2965 - cobalamin biosynthesis protein CbiG, at 3,173,041 to 3,173,826
_2965
Position (kb)
3170
3171
3172
3173 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3169.943 kb on - strand, within Dsui_2962 at 3170.159 kb on - strand at 3170.250 kb on + strand, within Dsui_2962 at 3170.250 kb on + strand, within Dsui_2962 at 3170.250 kb on + strand, within Dsui_2962 at 3170.258 kb on - strand at 3170.258 kb on - strand at 3170.258 kb on - strand at 3170.365 kb on + strand, within Dsui_2962 at 3170.429 kb on + strand, within Dsui_2962 at 3170.444 kb on + strand, within Dsui_2962 at 3170.533 kb on + strand, within Dsui_2962 at 3170.578 kb on + strand, within Dsui_2962 at 3170.598 kb on + strand, within Dsui_2962 at 3170.626 kb on - strand at 3170.643 kb on + strand, within Dsui_2962 at 3170.930 kb on + strand at 3170.938 kb on - strand at 3170.938 kb on - strand at 3171.217 kb on - strand at 3171.324 kb on - strand at 3171.566 kb on - strand, within Dsui_2963 at 3171.580 kb on + strand, within Dsui_2963 at 3171.737 kb on + strand, within Dsui_2963 at 3171.806 kb on + strand, within Dsui_2963 at 3171.806 kb on + strand, within Dsui_2963 at 3171.814 kb on - strand, within Dsui_2963 at 3172.068 kb on + strand, within Dsui_2963 at 3172.129 kb on + strand at 3172.210 kb on - strand at 3172.359 kb on - strand, within Dsui_2964 at 3172.381 kb on + strand, within Dsui_2964 at 3172.498 kb on + strand, within Dsui_2964 at 3172.603 kb on - strand at 3172.668 kb on + strand, within Dsui_2964 at 3172.808 kb on + strand, within Dsui_2964 at 3172.914 kb on - strand, within Dsui_2964 at 3173.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,169,943 - Dsui_2962 0.18 -0.2 3,170,159 - +0.8 3,170,250 + Dsui_2962 0.44 +0.8 3,170,250 + Dsui_2962 0.44 -1.5 3,170,250 + Dsui_2962 0.44 +0.2 3,170,258 - -0.2 3,170,258 - +0.8 3,170,258 - -0.2 3,170,365 + Dsui_2962 0.53 -2.0 3,170,429 + Dsui_2962 0.59 +1.1 3,170,444 + Dsui_2962 0.60 +3.4 3,170,533 + Dsui_2962 0.67 -1.5 3,170,578 + Dsui_2962 0.71 -0.6 3,170,598 + Dsui_2962 0.73 -0.2 3,170,626 - -1.5 3,170,643 + Dsui_2962 0.77 +0.8 3,170,930 + +0.8 3,170,938 - +0.8 3,170,938 - +0.8 3,171,217 - -0.7 3,171,324 - -0.2 3,171,566 - Dsui_2963 0.50 -0.2 3,171,580 + Dsui_2963 0.51 +1.1 3,171,737 + Dsui_2963 0.63 -2.3 3,171,806 + Dsui_2963 0.69 +1.4 3,171,806 + Dsui_2963 0.69 +1.4 3,171,814 - Dsui_2963 0.69 +0.8 3,172,068 + Dsui_2963 0.89 +1.5 3,172,129 + -0.7 3,172,210 - +0.8 3,172,359 - Dsui_2964 0.18 -1.2 3,172,381 + Dsui_2964 0.21 +0.8 3,172,498 + Dsui_2964 0.36 -1.2 3,172,603 - +0.8 3,172,668 + Dsui_2964 0.57 +0.7 3,172,808 + Dsui_2964 0.74 -0.5 3,172,914 - Dsui_2964 0.88 -1.5 3,173,016 + +0.4
Or see this region's nucleotide sequence