Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2959 and Dsui_2960 are separated by 9 nucleotides Dsui_2960 and Dsui_2961 are separated by 3 nucleotides Dsui_2961 and Dsui_2962 overlap by 11 nucleotides
Dsui_2959: Dsui_2959 - precorrin-4 C11-methyltransferase, at 3,167,254 to 3,168,057
_2959
Dsui_2960: Dsui_2960 - hypothetical protein, at 3,168,067 to 3,169,053
_2960
Dsui_2961: Dsui_2961 - precorrin isomerase, at 3,169,057 to 3,169,737
_2961
Dsui_2962: Dsui_2962 - cobalamin biosynthesis protein CbiD, at 3,169,727 to 3,170,923
_2962
Position (kb)
3169
3170 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3168.100 kb on - strand at 3168.321 kb on + strand, within Dsui_2960 at 3168.321 kb on + strand, within Dsui_2960 at 3168.329 kb on - strand, within Dsui_2960 at 3168.455 kb on + strand, within Dsui_2960 at 3168.458 kb on - strand, within Dsui_2960 at 3168.585 kb on - strand, within Dsui_2960 at 3168.642 kb on + strand, within Dsui_2960 at 3168.788 kb on + strand, within Dsui_2960 at 3169.054 kb on + strand at 3169.089 kb on + strand at 3169.097 kb on - strand at 3169.198 kb on + strand, within Dsui_2961 at 3169.278 kb on + strand, within Dsui_2961 at 3169.286 kb on - strand, within Dsui_2961 at 3169.404 kb on + strand, within Dsui_2961 at 3169.560 kb on + strand at 3169.640 kb on - strand at 3169.703 kb on + strand at 3169.716 kb on - strand at 3169.754 kb on + strand at 3169.754 kb on + strand at 3169.886 kb on - strand, within Dsui_2962 at 3169.886 kb on - strand, within Dsui_2962 at 3169.943 kb on - strand, within Dsui_2962 at 3170.159 kb on - strand at 3170.250 kb on + strand, within Dsui_2962 at 3170.250 kb on + strand, within Dsui_2962 at 3170.250 kb on + strand, within Dsui_2962 at 3170.258 kb on - strand at 3170.258 kb on - strand at 3170.258 kb on - strand at 3170.365 kb on + strand, within Dsui_2962 at 3170.429 kb on + strand, within Dsui_2962 at 3170.444 kb on + strand, within Dsui_2962 at 3170.533 kb on + strand, within Dsui_2962 at 3170.578 kb on + strand, within Dsui_2962 at 3170.598 kb on + strand, within Dsui_2962 at 3170.626 kb on - strand at 3170.643 kb on + strand, within Dsui_2962
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,168,100 - +0.8 3,168,321 + Dsui_2960 0.26 -0.6 3,168,321 + Dsui_2960 0.26 -1.2 3,168,329 - Dsui_2960 0.27 -1.7 3,168,455 + Dsui_2960 0.39 -2.3 3,168,458 - Dsui_2960 0.40 -1.2 3,168,585 - Dsui_2960 0.52 -1.7 3,168,642 + Dsui_2960 0.58 +0.3 3,168,788 + Dsui_2960 0.73 -1.3 3,169,054 + -0.2 3,169,089 + -1.3 3,169,097 - -0.2 3,169,198 + Dsui_2961 0.21 +0.7 3,169,278 + Dsui_2961 0.32 +1.2 3,169,286 - Dsui_2961 0.34 -0.7 3,169,404 + Dsui_2961 0.51 +0.2 3,169,560 + -1.5 3,169,640 - +0.8 3,169,703 + +1.1 3,169,716 - +0.8 3,169,754 + +0.8 3,169,754 + -0.7 3,169,886 - Dsui_2962 0.13 -1.5 3,169,886 - Dsui_2962 0.13 -0.7 3,169,943 - Dsui_2962 0.18 -0.2 3,170,159 - +0.8 3,170,250 + Dsui_2962 0.44 +0.8 3,170,250 + Dsui_2962 0.44 -1.5 3,170,250 + Dsui_2962 0.44 +0.2 3,170,258 - -0.2 3,170,258 - +0.8 3,170,258 - -0.2 3,170,365 + Dsui_2962 0.53 -2.0 3,170,429 + Dsui_2962 0.59 +1.1 3,170,444 + Dsui_2962 0.60 +3.4 3,170,533 + Dsui_2962 0.67 -1.5 3,170,578 + Dsui_2962 0.71 -0.6 3,170,598 + Dsui_2962 0.73 -0.2 3,170,626 - -1.5 3,170,643 + Dsui_2962 0.77 +0.8
Or see this region's nucleotide sequence