Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2951 and Dsui_2952 overlap by 4 nucleotides Dsui_2952 and Dsui_2953 are separated by 8 nucleotides
Dsui_2951: Dsui_2951 - putative iron-regulated membrane protein, at 3,158,704 to 3,159,981
_2951
Dsui_2952: Dsui_2952 - outer membrane porin, OprD family, at 3,159,978 to 3,161,300
_2952
Dsui_2953: Dsui_2953 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,161,309 to 3,162,703
_2953
Position (kb)
3159
3160
3161
3162 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3159.002 kb on + strand, within Dsui_2951 at 3159.020 kb on - strand, within Dsui_2951 at 3159.023 kb on + strand, within Dsui_2951 at 3159.138 kb on + strand, within Dsui_2951 at 3159.153 kb on + strand at 3159.210 kb on + strand at 3159.210 kb on + strand at 3159.218 kb on - strand, within Dsui_2951 at 3159.402 kb on + strand at 3159.428 kb on + strand, within Dsui_2951 at 3159.442 kb on + strand, within Dsui_2951 at 3159.471 kb on + strand, within Dsui_2951 at 3159.484 kb on + strand, within Dsui_2951 at 3159.744 kb on + strand at 3159.752 kb on - strand, within Dsui_2951 at 3160.034 kb on - strand at 3160.166 kb on + strand, within Dsui_2952 at 3160.311 kb on - strand, within Dsui_2952 at 3160.322 kb on - strand at 3160.364 kb on + strand at 3160.368 kb on - strand, within Dsui_2952 at 3160.378 kb on - strand, within Dsui_2952 at 3160.521 kb on + strand, within Dsui_2952 at 3160.539 kb on - strand, within Dsui_2952 at 3160.570 kb on - strand, within Dsui_2952 at 3160.723 kb on + strand at 3160.733 kb on + strand at 3160.814 kb on - strand, within Dsui_2952 at 3160.826 kb on + strand at 3160.834 kb on - strand, within Dsui_2952 at 3160.834 kb on - strand, within Dsui_2952 at 3160.931 kb on - strand, within Dsui_2952 at 3160.983 kb on - strand, within Dsui_2952 at 3161.042 kb on - strand, within Dsui_2952 at 3161.054 kb on - strand at 3161.108 kb on - strand, within Dsui_2952 at 3161.181 kb on - strand at 3161.187 kb on - strand at 3161.276 kb on - strand at 3161.276 kb on - strand at 3161.430 kb on + strand at 3161.660 kb on - strand, within Dsui_2953 at 3161.734 kb on - strand, within Dsui_2953 at 3161.759 kb on - strand, within Dsui_2953 at 3161.831 kb on + strand at 3161.846 kb on - strand, within Dsui_2953 at 3161.856 kb on - strand, within Dsui_2953 at 3161.856 kb on - strand, within Dsui_2953 at 3161.910 kb on - strand, within Dsui_2953 at 3161.971 kb on - strand, within Dsui_2953 at 3161.971 kb on - strand, within Dsui_2953 at 3161.978 kb on - strand, within Dsui_2953 at 3162.028 kb on + strand at 3162.033 kb on - strand, within Dsui_2953 at 3162.118 kb on + strand at 3162.292 kb on - strand, within Dsui_2953
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,159,002 + Dsui_2951 0.23 -1.7 3,159,020 - Dsui_2951 0.25 +0.9 3,159,023 + Dsui_2951 0.25 +0.9 3,159,138 + Dsui_2951 0.34 -0.7 3,159,153 + +0.9 3,159,210 + +0.9 3,159,210 + +0.9 3,159,218 - Dsui_2951 0.40 +0.9 3,159,402 + +0.9 3,159,428 + Dsui_2951 0.57 -0.1 3,159,442 + Dsui_2951 0.58 -2.8 3,159,471 + Dsui_2951 0.60 -2.1 3,159,484 + Dsui_2951 0.61 -1.1 3,159,744 + -0.1 3,159,752 - Dsui_2951 0.82 -1.5 3,160,034 - -0.2 3,160,166 + Dsui_2952 0.14 -1.5 3,160,311 - Dsui_2952 0.25 +0.8 3,160,322 - +0.8 3,160,364 + -0.2 3,160,368 - Dsui_2952 0.29 +0.8 3,160,378 - Dsui_2952 0.30 -1.5 3,160,521 + Dsui_2952 0.41 +0.7 3,160,539 - Dsui_2952 0.42 -2.3 3,160,570 - Dsui_2952 0.45 -0.7 3,160,723 + -0.7 3,160,733 + -0.2 3,160,814 - Dsui_2952 0.63 -0.7 3,160,826 + +0.8 3,160,834 - Dsui_2952 0.65 +0.8 3,160,834 - Dsui_2952 0.65 +0.8 3,160,931 - Dsui_2952 0.72 +0.8 3,160,983 - Dsui_2952 0.76 -0.7 3,161,042 - Dsui_2952 0.80 -1.2 3,161,054 - +0.8 3,161,108 - Dsui_2952 0.85 -1.2 3,161,181 - +0.8 3,161,187 - -1.2 3,161,276 - -0.2 3,161,276 - -3.1 3,161,430 + -1.5 3,161,660 - Dsui_2953 0.25 +0.8 3,161,734 - Dsui_2953 0.30 -0.7 3,161,759 - Dsui_2953 0.32 -1.2 3,161,831 + -0.2 3,161,846 - Dsui_2953 0.38 +0.8 3,161,856 - Dsui_2953 0.39 -2.2 3,161,856 - Dsui_2953 0.39 -0.7 3,161,910 - Dsui_2953 0.43 -0.2 3,161,971 - Dsui_2953 0.47 +2.4 3,161,971 - Dsui_2953 0.47 +1.3 3,161,978 - Dsui_2953 0.48 -0.9 3,162,028 + -0.2 3,162,033 - Dsui_2953 0.52 -0.7 3,162,118 + +0.8 3,162,292 - Dsui_2953 0.70 +0.3
Or see this region's nucleotide sequence