Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2946 and Dsui_2947 overlap by 4 nucleotides Dsui_2947 and Dsui_2948 are separated by 170 nucleotides Dsui_2948 and Dsui_2949 overlap by 1 nucleotides
Dsui_2946: Dsui_2946 - DNA/RNA helicase, superfamily II, at 3,152,486 to 3,153,916
_2946
Dsui_2947: Dsui_2947 - putative metal-dependent hydrolase, at 3,153,913 to 3,154,479
_2947
Dsui_2948: Dsui_2948 - RNA polymerase sigma factor, sigma-70 family, at 3,154,650 to 3,155,147
_2948
Dsui_2949: Dsui_2949 - Fe2+-dicitrate sensor, membrane component, at 3,155,147 to 3,156,166
_2949
Position (kb)
3154
3155
3156 Strain fitness (log2 ratio)
-1
0
1 at 3153.693 kb on + strand, within Dsui_2946 at 3153.819 kb on + strand at 3153.882 kb on - strand at 3153.981 kb on - strand, within Dsui_2947 at 3154.021 kb on + strand, within Dsui_2947 at 3154.079 kb on + strand, within Dsui_2947 at 3154.195 kb on - strand, within Dsui_2947 at 3154.233 kb on + strand, within Dsui_2947 at 3154.282 kb on + strand, within Dsui_2947 at 3154.315 kb on + strand, within Dsui_2947 at 3154.323 kb on - strand, within Dsui_2947 at 3154.394 kb on - strand at 3154.540 kb on - strand at 3154.540 kb on - strand at 3154.601 kb on + strand at 3154.609 kb on - strand at 3154.653 kb on + strand at 3154.690 kb on - strand at 3154.690 kb on - strand at 3154.690 kb on - strand at 3154.824 kb on - strand, within Dsui_2948 at 3154.859 kb on - strand at 3154.889 kb on - strand, within Dsui_2948 at 3154.894 kb on - strand, within Dsui_2948 at 3154.899 kb on + strand, within Dsui_2948 at 3154.962 kb on + strand, within Dsui_2948 at 3154.967 kb on + strand, within Dsui_2948 at 3155.164 kb on - strand at 3155.272 kb on + strand, within Dsui_2949 at 3155.286 kb on + strand, within Dsui_2949 at 3155.499 kb on + strand, within Dsui_2949 at 3155.616 kb on - strand, within Dsui_2949 at 3155.852 kb on - strand at 3155.910 kb on + strand, within Dsui_2949 at 3156.078 kb on - strand at 3156.111 kb on + strand at 3156.116 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,153,693 + Dsui_2946 0.84 +0.6 3,153,819 + +0.8 3,153,882 - +0.8 3,153,981 - Dsui_2947 0.12 +0.8 3,154,021 + Dsui_2947 0.19 +1.0 3,154,079 + Dsui_2947 0.29 +0.1 3,154,195 - Dsui_2947 0.50 +0.8 3,154,233 + Dsui_2947 0.56 +0.8 3,154,282 + Dsui_2947 0.65 -1.5 3,154,315 + Dsui_2947 0.71 -1.5 3,154,323 - Dsui_2947 0.72 -0.7 3,154,394 - -0.2 3,154,540 - +0.8 3,154,540 - +0.8 3,154,601 + +0.2 3,154,609 - -0.2 3,154,653 + +0.3 3,154,690 - +0.8 3,154,690 - +0.8 3,154,690 - +0.8 3,154,824 - Dsui_2948 0.35 -0.2 3,154,859 - +0.8 3,154,889 - Dsui_2948 0.48 -0.2 3,154,894 - Dsui_2948 0.49 -1.2 3,154,899 + Dsui_2948 0.50 +0.7 3,154,962 + Dsui_2948 0.63 -0.3 3,154,967 + Dsui_2948 0.64 +0.6 3,155,164 - +0.8 3,155,272 + Dsui_2949 0.12 -0.4 3,155,286 + Dsui_2949 0.14 +0.9 3,155,499 + Dsui_2949 0.35 -0.9 3,155,616 - Dsui_2949 0.46 -0.7 3,155,852 - -0.1 3,155,910 + Dsui_2949 0.75 -0.1 3,156,078 - -0.1 3,156,111 + -1.1 3,156,116 + -0.5
Or see this region's nucleotide sequence