Experiment: ALP with Fusidic 0.007 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2933 and Dsui_2934 are separated by 63 nucleotides Dsui_2934 and Dsui_2935 are separated by 239 nucleotides Dsui_2935 and Dsui_2936 overlap by 1 nucleotides Dsui_2936 and Dsui_2937 are separated by 0 nucleotides
Dsui_2933: Dsui_2933 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,136,400 to 3,139,513
_2933
Dsui_2934: Dsui_2934 - hypothetical protein, at 3,139,577 to 3,139,960
_2934
Dsui_2935: Dsui_2935 - NAD/NADP transhydrogenase alpha subunit, at 3,140,200 to 3,141,327
_2935
Dsui_2936: Dsui_2936 - hypothetical protein, at 3,141,327 to 3,141,629
_2936
Dsui_2937: Dsui_2937 - NAD/NADP transhydrogenase beta subunit, at 3,141,630 to 3,143,000
_2937
Position (kb)
3140
3141
3142 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3139.203 kb on - strand at 3139.324 kb on - strand at 3139.420 kb on + strand at 3139.420 kb on + strand at 3139.557 kb on - strand at 3139.749 kb on + strand, within Dsui_2934 at 3139.757 kb on - strand, within Dsui_2934 at 3139.944 kb on + strand at 3139.963 kb on - strand at 3140.115 kb on + strand at 3140.115 kb on + strand at 3140.196 kb on - strand at 3140.205 kb on + strand at 3140.310 kb on + strand at 3140.317 kb on + strand, within Dsui_2935 at 3140.427 kb on + strand, within Dsui_2935 at 3140.462 kb on + strand, within Dsui_2935 at 3140.467 kb on + strand at 3140.481 kb on + strand at 3140.523 kb on - strand at 3140.529 kb on + strand, within Dsui_2935 at 3140.546 kb on + strand at 3140.605 kb on - strand, within Dsui_2935 at 3140.634 kb on + strand at 3141.020 kb on - strand at 3141.131 kb on + strand at 3141.334 kb on + strand at 3141.366 kb on + strand, within Dsui_2936 at 3141.398 kb on - strand at 3141.405 kb on + strand, within Dsui_2936 at 3141.474 kb on + strand, within Dsui_2936 at 3141.692 kb on + strand at 3141.706 kb on - strand at 3141.780 kb on - strand, within Dsui_2937 at 3141.813 kb on + strand, within Dsui_2937 at 3141.819 kb on + strand, within Dsui_2937 at 3141.825 kb on + strand, within Dsui_2937 at 3141.844 kb on + strand, within Dsui_2937 at 3141.882 kb on + strand, within Dsui_2937 at 3142.049 kb on - strand at 3142.052 kb on + strand, within Dsui_2937 at 3142.053 kb on + strand, within Dsui_2937 at 3142.109 kb on + strand, within Dsui_2937 at 3142.110 kb on + strand, within Dsui_2937 at 3142.176 kb on - strand, within Dsui_2937 at 3142.213 kb on + strand, within Dsui_2937 at 3142.306 kb on + strand, within Dsui_2937 at 3142.311 kb on + strand, within Dsui_2937 at 3142.321 kb on + strand, within Dsui_2937 at 3142.321 kb on + strand, within Dsui_2937
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.007 mg/ml remove 3,139,203 - -0.8 3,139,324 - +0.8 3,139,420 + -1.8 3,139,420 + +0.8 3,139,557 - +0.8 3,139,749 + Dsui_2934 0.45 -0.8 3,139,757 - Dsui_2934 0.47 -0.8 3,139,944 + +0.8 3,139,963 - -0.2 3,140,115 + -0.8 3,140,115 + +0.8 3,140,196 - -0.2 3,140,205 + +0.8 3,140,310 + -0.2 3,140,317 + Dsui_2935 0.10 -1.5 3,140,427 + Dsui_2935 0.20 -0.2 3,140,462 + Dsui_2935 0.23 -0.2 3,140,467 + +0.8 3,140,481 + +0.8 3,140,523 - +0.8 3,140,529 + Dsui_2935 0.29 -1.8 3,140,546 + +0.8 3,140,605 - Dsui_2935 0.36 -0.8 3,140,634 + +0.8 3,141,020 - -0.2 3,141,131 + +0.8 3,141,334 + -0.2 3,141,366 + Dsui_2936 0.13 -0.2 3,141,398 - +0.8 3,141,405 + Dsui_2936 0.26 -0.8 3,141,474 + Dsui_2936 0.49 +0.8 3,141,692 + +0.8 3,141,706 - -1.8 3,141,780 - Dsui_2937 0.11 +0.8 3,141,813 + Dsui_2937 0.13 -1.5 3,141,819 + Dsui_2937 0.14 +0.8 3,141,825 + Dsui_2937 0.14 +0.8 3,141,844 + Dsui_2937 0.16 -3.0 3,141,882 + Dsui_2937 0.18 -0.2 3,142,049 - -0.2 3,142,052 + Dsui_2937 0.31 -0.2 3,142,053 + Dsui_2937 0.31 -0.8 3,142,109 + Dsui_2937 0.35 -0.8 3,142,110 + Dsui_2937 0.35 -0.2 3,142,176 - Dsui_2937 0.40 -1.8 3,142,213 + Dsui_2937 0.43 -2.2 3,142,306 + Dsui_2937 0.49 +0.8 3,142,311 + Dsui_2937 0.50 -0.8 3,142,321 + Dsui_2937 0.50 -0.8 3,142,321 + Dsui_2937 0.50 -1.2
Or see this region's nucleotide sequence